Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0688.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)              64   3e-11
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   3e-08
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)              45   2e-05
SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.007
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              35   0.029
SB_2577| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.12 
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   4.5  
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
          Length = 373

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 35/71 (49%), Positives = 43/71 (60%)
 Frame = +3

Query: 33  PEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFG 212
           P  F   +F  E IGV++P+EN M  PR       VL  GMS VTL+Y+L+G LGYL  G
Sbjct: 195 PLAFGAVVFTYEGIGVILPVENMMAIPRRFRW---VLYAGMSLVTLLYLLMGVLGYLSCG 251

Query: 213 EEVQDSITLSL 245
              Q SITL+L
Sbjct: 252 TSCQGSITLNL 262



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 269 VKLSIAIAVYCTFGLQFFVCIDIMWNGIKDK 361
           VKL IA +++ T+ +QF+V   I++  +K +
Sbjct: 271 VKLIIAASIFLTYFIQFYVITSILFPFVKGR 301


>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/68 (42%), Positives = 38/68 (55%)
 Frame = +3

Query: 6   PLFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILL 185
           P F   +  P FF + +F  E IGVV+PLEN M  P+       VLN GM  +  ++ L+
Sbjct: 170 PEFDGWAALPLFFGMVVFTFEGIGVVLPLENQMARPQHFR---LVLNVGMGIILAIFYLM 226

Query: 186 GFLGYLRF 209
           G LGYL F
Sbjct: 227 GVLGYLAF 234


>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
          Length = 332

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +3

Query: 78  VVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSITLSLGD 251
           +V+P+EN M+TPR       VLN  MS V ++Y+++G +GY+      + S TL+L D
Sbjct: 134 LVLPVENMMRTPR---DFTWVLNLAMSVVVILYLVVGTMGYISCAAMCKGSFTLNLPD 188


>SB_42788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 44/81 (54%)
 Frame = +3

Query: 6   PLFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILL 185
           P+F+ PS +P  F + +F+  A  V   +E SM+ P+    +   +N   +      +LL
Sbjct: 290 PVFE-PSTFPIGFGIIVFSYCAHAVFPGVEGSMQDPQKFPLM---MNTSFTLAAFNKVLL 345

Query: 186 GFLGYLRFGEEVQDSITLSLG 248
           G L  LRFG++ +  +T+++G
Sbjct: 346 GLLAVLRFGDQTEQVVTVNMG 366


>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +3

Query: 24  SEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYL 203
           S +P FF     A + IG ++P+E+SM   R    +   L+  +  ++ +    G  GYL
Sbjct: 582 STFPVFFGQVTSAYQGIGTLIPIESSMAENRHRYPL--YLHLALGLLSAILGGFGITGYL 639

Query: 204 RFGEEVQDSITLSL 245
            +GE V   +T  L
Sbjct: 640 VYGENVDQIVTSEL 653


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +3

Query: 30  WPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRF 209
           +P FF     A E IG ++P+E+ M + R    +   L+  ++ ++++    G LG+L +
Sbjct: 640 FPIFFGQLTCAYEGIGCIIPIESGMGSNRPRFPL--YLHLTLAQLSVLLGSFGVLGFLIY 697

Query: 210 GEEVQDSIT 236
           G +V   +T
Sbjct: 698 GNDVPQIVT 706


>SB_2577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 703

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 84  MP-LENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSITLSLGDXSL 260
           MP +E SM+ P        V+N     VT V +  GF+GYL F  +    IT +L +  L
Sbjct: 171 MPAIEGSMQRPH---NFNNVMNVTYIAVTFVKVFFGFIGYLTFTRDTDQVITNNLPEGVL 227


>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +3

Query: 24  SEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYL 203
           + +P    + +F+     V   +E+SM+ PR    I        + VTL  + +G L  L
Sbjct: 337 NNFPVAIGIIVFSYCGHSVFPGIESSMRKPRKFKKIACT---SFTSVTLCKVAIGLLCCL 393

Query: 204 RFGEEVQDSITLSL 245
            +G      ITL++
Sbjct: 394 LYGPHTLPLITLNI 407


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 83  HNSDGFHCENCERKEF 36
           HN+ G HC+NC  K +
Sbjct: 368 HNTQGDHCQNCTAKHY 383


>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 90  LENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSITLSL 245
           +E SMK P     +   +N   + VT++    G L Y  FG+  +  +TLSL
Sbjct: 229 IERSMKYPAEFNAM---MNFTYTLVTIIKYNYGILVYFAFGKHTEQLMTLSL 277


>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 48  LTIFAMEAIGVVMPLEN-SMKTPRAMLGICGVLNKGMSGVTLVYILLGFLG 197
           L   AM AI  +M L + S  T  ++LG C +   G+S + L+  L G LG
Sbjct: 242 LGCIAMYAILNLMSLADVSFSTVVSVLGYCLLPMVGLSAIALIVSLQGALG 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,055
Number of Sequences: 59808
Number of extensions: 227887
Number of successful extensions: 738
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)