Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0688.Seq
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 71 2e-13
AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical ... 71 2e-13
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 69 1e-12
U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical pr... 69 1e-12
U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical pr... 69 1e-12
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 67 4e-12
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical p... 32 0.18
AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein. 32 0.18
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 2.3
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 2.3
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 28 3.0
AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched relat... 27 5.2
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 6.9
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 27 6.9
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 6.9
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 6.9
AC024831-9|AAY86309.1| 74|Caenorhabditis elegans Hypothetical ... 26 9.1
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 71.3 bits (167), Expect = 2e-13
Identities = 32/80 (40%), Positives = 48/80 (60%)
Frame = +3
Query: 6 PLFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILL 185
P F ++ P FF +FA E + V+MP+EN M++P A + GVLN V ++ +
Sbjct: 237 PWFGKATDLPLFFGTVMFAFEGVAVIMPIENRMQSPHAFISWNGVLNSSCLVVLAIFSVT 296
Query: 186 GFLGYLRFGEEVQDSITLSL 245
GF GYL G +V+D+ TL+L
Sbjct: 297 GFYGYLSLGNDVKDTATLNL 316
>AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical
protein T27A1.5 protein.
Length = 449
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +3
Query: 6 PLFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILL 185
P F P FF +FA E + VV+P+EN M P + GVLN V LVY+ +
Sbjct: 227 PAFGAVENLPLFFGTVMFAFEGVAVVLPIENQMNEPIHFITPNGVLNTSCILVLLVYMTV 286
Query: 186 GFLGYLRFGEEVQDSITLSL 245
GF G+LR+G +++D++TL+L
Sbjct: 287 GFFGFLRYGNDIKDTLTLNL 306
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 68.9 bits (161), Expect = 1e-12
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +3
Query: 54 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSI 233
I++ E +V+P+ENS+K P+ M G GVL+ M+ VT++Y LGF GY+ FG VQ S+
Sbjct: 270 IYSFEGQAMVLPMENSLKYPKDMTGATGVLSTAMNLVTVLYAFLGFFGYVTFGPAVQGSL 329
Query: 234 TLSL 245
TL+L
Sbjct: 330 TLNL 333
>U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical
protein C44B7.6b protein.
Length = 434
Score = 68.9 bits (161), Expect = 1e-12
Identities = 32/69 (46%), Positives = 46/69 (66%)
Frame = +3
Query: 54 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSI 233
++A+E +V+PLEN MK P M G GVL+ G+ V ++Y GF G+L +G +VQDSI
Sbjct: 226 LYALEGQAMVLPLENRMKKPEDMKGPFGVLSVGVGMVVVIYSFAGFFGFLTYGNDVQDSI 285
Query: 234 TLSLGDXSL 260
TL+L + L
Sbjct: 286 TLNLPNDHL 294
>U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical
protein C44B7.6a protein.
Length = 489
Score = 68.9 bits (161), Expect = 1e-12
Identities = 32/69 (46%), Positives = 46/69 (66%)
Frame = +3
Query: 54 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSI 233
++A+E +V+PLEN MK P M G GVL+ G+ V ++Y GF G+L +G +VQDSI
Sbjct: 281 LYALEGQAMVLPLENRMKKPEDMKGPFGVLSVGVGMVVVIYSFAGFFGFLTYGNDVQDSI 340
Query: 234 TLSLGDXSL 260
TL+L + L
Sbjct: 341 TLNLPNDHL 349
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 67.3 bits (157), Expect = 4e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +3
Query: 54 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSI 233
I++ E +V+PLENS+K P+ M G+ GVL+ M+ V + Y LGF GY+ FG +V+ S+
Sbjct: 242 IYSFEGQAMVLPLENSLKHPQDMRGLTGVLSTAMNVVIVFYAFLGFFGYIAFGPDVRGSL 301
Query: 234 TLSL 245
TL+L
Sbjct: 302 TLNL 305
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +3
Query: 48 LTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQD 227
++++A E +++P+EN + P A L GVL+ M T LGF GY FG+ +
Sbjct: 242 MSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTAFMTALGFFGYTGFGDSIAP 301
Query: 228 SITLSL 245
+IT ++
Sbjct: 302 TITTNV 307
>Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical
protein T20G5.6 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.18
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 33 PEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFG 212
P + +F + + LE +MK P A + +L + ++ G LG+L FG
Sbjct: 268 PTIVGMVVFGYTSHIFLPNLEGNMKNP-AQFNV--MLKWSHIAAAVFKVVFGMLGFLTFG 324
Query: 213 EEVQDSITLSLGDXS 257
E Q+ I+ SL + S
Sbjct: 325 ELTQEEISNSLPNQS 339
>AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.18
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 33 PEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFG 212
P + +F + + LE +MK P A + +L + ++ G LG+L FG
Sbjct: 268 PTIVGMVVFGYTSHIFLPNLEGNMKNP-AQFNV--MLKWSHIAAAVFKVVFGMLGFLTFG 324
Query: 213 EEVQDSITLSLGDXS 257
E Q+ I+ SL + S
Sbjct: 325 ELTQEEISNSLPNQS 339
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 125 EHRTRGLH*VFERHHNSDGFHCENCERKEFG 33
+H R H E HH +D H EN +RK+ G
Sbjct: 82 DHARRRRHHNHEGHHGNDMKHRENMDRKKHG 112
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.3 bits (60), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFG 33
HN++G HCE C++ +G
Sbjct: 1031 HNTEGTHCERCKKGYYG 1047
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 54 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSI 233
IFA + + + MKTP+ C +L+ + L+Y + G+ +G+ V DSI
Sbjct: 204 IFAYGGHPCIPTIVHDMKTPQHYFR-CFLLS--YIALFLLYTPVSLFGFWIYGDSVSDSI 260
Query: 234 TLSLGDXSL 260
S+ + SL
Sbjct: 261 ISSIQNDSL 269
>AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched related
family protein 21 protein.
Length = 909
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 84 MPLENSMKTPRAMLGICGV-----LNKGMSGVTLVYILLGFLGYLRFGEEVQDSITL 239
+ + N++ T M +C V L+ G++ +++ I +G GYL F + D +TL
Sbjct: 698 LAISNALVTLGCMAAVCVVFIRNPLSVGLATASILSISIGVTGYLCFWDLDLDPVTL 754
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.6 bits (56), Expect = 6.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFGP 30
HN++GF+CE C+ + P
Sbjct: 392 HNTEGFNCERCKDGYYRP 409
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 358 ILNTVPHNVDAHEELQAKSAVYCNGYRQ 275
+LNTVP ++D E AK ++ R+
Sbjct: 917 VLNTVPQSIDEIAEANAKHVIFAENNRR 944
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.6 bits (56), Expect = 6.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFGP 30
HN++GF+CE C+ + P
Sbjct: 392 HNTEGFNCERCKDGYYRP 409
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 26.6 bits (56), Expect = 6.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 83 HNSDGFHCENCERKEFGP 30
HN++GF+CE C+ + P
Sbjct: 392 HNTEGFNCERCKDGYYRP 409
>AC024831-9|AAY86309.1| 74|Caenorhabditis elegans Hypothetical
protein Y55F3C.4 protein.
Length = 74
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 160 PDMPLFNTPQIPSIARGVFIEFSRGITTPMASIAKI 53
PD P+ NTP I S RG + + P +S+A I
Sbjct: 37 PDRPVLNTPPISSRVRGEKLVNYMERSPPSSSVAII 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,899,175
Number of Sequences: 27780
Number of extensions: 166846
Number of successful extensions: 503
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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