Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0688.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.14 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.14 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.44 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   1.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   1.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 278 SIAIAVYCTFGLQFFVCIDIMW 343
           S A++ +C   L FF CI I W
Sbjct: 447 SYAVSGFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 278 SIAIAVYCTFGLQFFVCIDIMW 343
           S A++ +C   L FF CI I W
Sbjct: 500 SYAVSGFCLLFLMFFECIAISW 521


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 358 ILNTVPHNVDAHEELQAKSAVYCNGYRQFYY 266
           I++++ +N + +     K  +YCN YR+ YY
Sbjct: 81  IISSLSNNYNYNNNNYKK--LYCNNYRKLYY 109


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 358 ILNTVPHNVDAHEELQAKSAVYCNGYRQFYY 266
           I++++ +N + +     K  +YCN Y++ YY
Sbjct: 81  IISSLSNNYNYNNNNYKK--LYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 358 ILNTVPHNVDAHEELQAKSAVYCNGYRQFYY 266
           I++++ +N + +     K  +YCN Y++ YY
Sbjct: 81  IISSLSNNYNYNNNNYKK--LYCNNYKKLYY 109


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 164 NXGHAFVQYTADTEHR 117
           N GH  + Y  D +HR
Sbjct: 366 NFGHVAISYIHDPDHR 381


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -3

Query: 86 HHNSDGFHCENCERK 42
          H     +HC +C+R+
Sbjct: 32 HTGEKPYHCSHCDRQ 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,746
Number of Sequences: 438
Number of extensions: 2007
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)