Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0688.Seq
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38250.1 68417.m05402 amino acid transporter family protein l... 58 2e-09
At3g11900.1 68416.m01459 amino acid transporter family protein l... 53 9e-08
At5g65990.1 68418.m08308 amino acid transporter family protein s... 47 6e-06
At2g42005.1 68415.m05196 amino acid transporter family protein l... 46 1e-05
At5g15240.1 68418.m01785 amino acid transporter family protein l... 32 0.13
At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive eff... 31 0.39
At3g28960.1 68416.m03620 amino acid transporter family protein l... 31 0.39
At1g24400.1 68414.m03076 lysine and histidine specific transport... 29 1.2
At5g02180.1 68418.m00139 amino acid transporter family protein b... 29 1.6
At2g39130.1 68415.m04807 amino acid transporter family protein b... 29 1.6
At1g10010.1 68414.m01129 amino acid permease, putative similar t... 29 1.6
At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP... 28 2.1
At3g51050.1 68416.m05590 FG-GAP repeat-containing protein 28 2.1
At3g09330.1 68416.m01107 amino acid transporter family protein b... 28 2.1
At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical ... 28 2.8
At5g40780.2 68418.m04951 lysine and histidine specific transport... 27 3.7
At5g40780.1 68418.m04950 lysine and histidine specific transport... 27 3.7
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 27 3.7
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 27 3.7
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 27 3.7
At3g09340.1 68416.m01108 amino acid transporter family protein l... 27 3.7
At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical ... 27 3.7
At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ... 27 3.7
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ... 27 4.8
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 27 4.8
At3g54830.1 68416.m06074 amino acid transporter family protein b... 27 4.8
At1g10090.1 68414.m01137 expressed protein 27 4.8
At1g22490.1 68414.m02810 basic helix-loop-helix (bHLH) family pr... 27 6.4
At5g39770.1 68418.m04817 repair endonuclease family protein cont... 26 8.5
>At4g38250.1 68417.m05402 amino acid transporter family protein low
similarity to lysosomal amino acid transporter 1 [Rattus
norvegicus] GI:14571904; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 436
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = +3
Query: 48 LTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQD 227
+ +++ E +G+V+PLE+ MK + G VL GM ++L+YI G LGYL FGE+ D
Sbjct: 244 VAVYSFEGVGMVLPLESEMKD-KDKFG--KVLALGMGFISLIYIAFGILGYLAFGEDTMD 300
Query: 228 SITLSLG 248
IT +LG
Sbjct: 301 IITANLG 307
>At3g11900.1 68416.m01459 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 432
Score = 52.8 bits (121), Expect = 9e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +3
Query: 48 LTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQD 227
+ +F E + + LE+SM+ A + L K ++G+T VY+L GF GY+ +G++ +D
Sbjct: 226 VAVFCFEGFAMTLALESSMREREAFPKL---LAKVLAGITFVYVLFGFCGYMAYGDQTKD 282
Query: 228 SITLSL 245
ITL+L
Sbjct: 283 IITLNL 288
>At5g65990.1 68418.m08308 amino acid transporter family protein
similar to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 427
Score = 46.8 bits (106), Expect = 6e-06
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +3
Query: 48 LTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQD 227
+ ++A E IG+V+PLE K + G L M ++++Y G LGY+ +GEE +D
Sbjct: 235 VAVYAFEGIGMVLPLELEAKY-KDKFG--RALGLAMGLISIMYGAFGLLGYMAYGEETKD 291
Query: 228 SITLSLG 248
IT +LG
Sbjct: 292 IITTNLG 298
>At2g42005.1 68415.m05196 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 413
Score = 45.6 bits (103), Expect = 1e-05
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 48 LTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQD 227
+ ++A E +G+V+PLE+ K + G VL M + ++Y G LGY+ FG++ D
Sbjct: 223 VAVYAFEGVGMVLPLESETKD-KDKFG--KVLALSMLFIAVMYGSFGVLGYMAFGDDTMD 279
Query: 228 SITLSLG 248
IT +LG
Sbjct: 280 IITANLG 286
>At5g15240.1 68418.m01785 amino acid transporter family protein low
similarity to amino acid transporter system A3 [Homo
sapiens] GI:13876616; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 423
Score = 32.3 bits (70), Expect = 0.13
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +3
Query: 45 SLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQ 224
SL F A V L SMK R + + + T +Y + LGYL +G +V+
Sbjct: 224 SLYAFCYCAHPVFPTLYTSMKNKRQFSNVMIIC---FTICTFIYASVAVLGYLMYGSDVE 280
Query: 225 DSITLSL 245
ITL+L
Sbjct: 281 SQITLNL 287
>At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 689
Score = 30.7 bits (66), Expect = 0.39
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 59 RNGSHRSCDASRKLNEDPSCDARYLRCIEQRHVRXYTSLHSSWLP 193
RN + D R N + S ++ L C+E R +R TS+ W P
Sbjct: 94 RNWGNHVLDIIRSANLNSSQESAILACLETREIRDKTSVKLIWGP 138
>At3g28960.1 68416.m03620 amino acid transporter family protein low
similarity to vesicular inhibitory amino acid
transporter [Mus musculus] GI:2826776; contains
INTERPRO:IPR002422 amino acid/polyamine transporter,
family II
Length = 405
Score = 30.7 bits (66), Expect = 0.39
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 33 PEFFSLTIFAMEAIGVVMPLENSMKTPRA---MLGICGVLNKGMSGVTLVYILLGFLGYL 203
P SL F A V+ L +SMK+ +L IC +L T+ Y + LGYL
Sbjct: 202 PTALSLYAFCYGAHPVLPTLYSSMKSKHQFNNVLLICFIL------CTIGYTSMAVLGYL 255
Query: 204 RFGEEVQDSITLSL 245
+G + ITL+L
Sbjct: 256 MYGSQTLSQITLNL 269
>At1g24400.1 68414.m03076 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 441
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 162 VTLVYILLGFLGYLRFGEEVQDSITLSL 245
V + Y + FLGY FG V D+I ++L
Sbjct: 270 VAICYFPVAFLGYYIFGNSVDDNILITL 297
>At5g02180.1 68418.m00139 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 165 TLVYILLGFLGYLRFGEEVQDSITLSL 245
T++YI + GY FGE V+ TL++
Sbjct: 387 TVLYIAVAVCGYTMFGEAVESQFTLNM 413
>At2g39130.1 68415.m04807 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 165 TLVYILLGFLGYLRFGEEVQDSITLSL 245
TL+Y + +GY FGE Q TL+L
Sbjct: 387 TLMYAGVAVMGYTMFGESTQSQFTLNL 413
>At1g10010.1 68414.m01129 amino acid permease, putative similar to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]; GC splice site at position 1256 is predicted
from alignment and not confirmed experimentally
Length = 475
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 150 GMSGVTLVYILLGFLGYLRFGEEVQDSITLSLG 248
G+S T+ YIL G +GY FG + G
Sbjct: 278 GVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFG 310
>At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP4)
identical to amino acid transporter GI:608671 from
[Arabidopsis thaliana];
Length = 466
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 30 WPEFFSL--TIFAMEAIGVVMPLENSMKTPRAMLGICGVLNK-GMSGVTLVYILLGFLGY 200
W F +L FA V++ +++++++P A + + ++ T Y+L G +GY
Sbjct: 225 WRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGY 284
Query: 201 LRFGEEVQDSITLSLG 248
FG++ ++ G
Sbjct: 285 AAFGDKAPGNLLTGFG 300
>At3g51050.1 68416.m05590 FG-GAP repeat-containing protein
Length = 698
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 382 ELRSFREFILNTVPHNVDAHEELQAKSA 299
E R FRE IL+ +PH D E+ K A
Sbjct: 291 ECREFRESILSVMPHRWDRREDTLLKLA 318
>At3g09330.1 68416.m01107 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 524
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 57 FAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSIT 236
F V+ + +SMK P + + +++ G YI++ GY FGE +Q T
Sbjct: 328 FGFSGHAVLPSIYSSMKEP-SKFPLVLLISFGFC--VFFYIVVAICGYSMFGEAIQSQFT 384
Query: 237 LSL 245
L++
Sbjct: 385 LNM 387
>At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical to
amine acid permease AAP2 [Arabidopsis thaliana]
GI:510236
Length = 493
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 30 WPEFFSL--TIFAMEAIGVVMPLENSMKTPRAMLGICGVLNK-GMSGVTLVYILLGFLGY 200
W F +L FA V++ +++++++P A K ++ T+ Y+L G +GY
Sbjct: 252 WRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGY 311
Query: 201 LRFGEEVQDSITLSLG 248
FG+ ++ G
Sbjct: 312 AAFGDAAPGNLLTGFG 327
>At5g40780.2 68418.m04951 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 445
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 162 VTLVYILLGFLGYLRFGEEVQDSITLSL 245
V L Y + +GY FG V+D+I +SL
Sbjct: 274 VALCYFPVALVGYYIFGNGVEDNILMSL 301
>At5g40780.1 68418.m04950 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 446
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 162 VTLVYILLGFLGYLRFGEEVQDSITLSL 245
V L Y + +GY FG V+D+I +SL
Sbjct: 275 VALCYFPVALVGYYIFGNGVEDNILMSL 302
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 3.7
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Frame = +2
Query: 32 ARILFAHNFRNGSHRSCDASRK-----------LNEDPSCDARY--LRCIEQRHVRXYT- 169
AR++ HN R GS SC RK + E S D R+ ++ H+R T
Sbjct: 161 ARMISRHNRRGGSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGTKRLHLRAETR 220
Query: 170 SLHSSWLPRLPAVRRGSPRFHHS 238
++W+ L AV+ PR +S
Sbjct: 221 EDRTTWVEALQAVKDMFPRMSNS 243
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 3.7
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Frame = +2
Query: 32 ARILFAHNFRNGSHRSCDASRK-----------LNEDPSCDARY--LRCIEQRHVRXYT- 169
AR++ HN R GS SC RK + E S D R+ ++ H+R T
Sbjct: 161 ARMISRHNRRGGSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGTKRLHLRAETR 220
Query: 170 SLHSSWLPRLPAVRRGSPRFHHS 238
++W+ L AV+ PR +S
Sbjct: 221 EDRTTWVEALQAVKDMFPRMSNS 243
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 27.5 bits (58), Expect = 3.7
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Frame = +2
Query: 32 ARILFAHNFRNGSHRSCDASRK-----------LNEDPSCDARY--LRCIEQRHVRXYT- 169
AR++ HN R GS SC RK + E S D R+ ++ H+R T
Sbjct: 161 ARMISRHNRRGGSSSSCQLRRKPFGEVHLKVSSVRESRSDDKRFSIFTGTKRLHLRAETR 220
Query: 170 SLHSSWLPRLPAVRRGSPRFHHS 238
++W+ L AV+ PR +S
Sbjct: 221 EDRTTWVEALQAVKDMFPRMSNS 243
>At3g09340.1 68416.m01108 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 528
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 57 FAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLVYILLGFLGYLRFGEEVQDSIT 236
F V+ + +SMK P + + +++ G YI + GY FGE +Q T
Sbjct: 328 FGFSGHAVLPSIYSSMKEP-SKFPLVLLISFGFC--VFFYIAVAICGYSMFGEAIQSQFT 384
Query: 237 LSL 245
L++
Sbjct: 385 LNM 387
>At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]
Length = 485
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 150 GMSGVTLVYILLGFLGYLRFGEEVQDSITLSLG 248
G+S T YIL G +GY FG G
Sbjct: 287 GVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFG 319
>At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5)
nearly identical to amino acid permease (AAP5) GI:608673
from [Arabidopsis thaliana]
Length = 480
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 30 WPEFFSL--TIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLV-YILLGFLGY 200
W F SL FA +++ +++++K+P A + VT V Y+L G +GY
Sbjct: 240 WRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGY 299
Query: 201 LRFGEEVQDSI 233
FG+ ++
Sbjct: 300 AAFGDNAPGNL 310
>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
amino acid permease 6 (AAP6) [Arabidopsis thaliana]
GI:1769887
Length = 481
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 150 GMSGVTLVYILLGFLGYLRFGEEVQDSITLSLG 248
G+S T Y+L G +GY FG + + G
Sbjct: 285 GVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFG 317
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 219 LPLRTAGSRGSQEECRLV*XRTCLCSIHRRYRASHEGSSLSFR 91
+P T +R E C++ H+R R +HEG FR
Sbjct: 1208 VPTTTHPNRCYLEGCKMTFESKAKLQTHKRNRCTHEGCGKKFR 1250
>At3g54830.1 68416.m06074 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 546
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 165 TLVYILLGFLGYLRFGEEVQDSITLSL 245
TL+Y + +GY FGE + TL+L
Sbjct: 377 TLMYAGVAVMGYSMFGESTESQFTLNL 403
>At1g10090.1 68414.m01137 expressed protein
Length = 762
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 44 FAHNFRNGSHRSCDASRKLNEDPSCDARYLRCI 142
F H N + R C A + ++ D SC+ C+
Sbjct: 229 FIHRLMNETERMCQAIKHVSPDLSCNPSLKSCV 261
>At1g22490.1 68414.m02810 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 218 FLSEPQVAEEAKKNVD*CNXGHAFVQYTADTEHRTRGLH 102
+ E VA++ K N+D +FV+ + +H+ R H
Sbjct: 28 YSQEEFVAQDTKNNIDKLGHEQSFVEQGKEDDHQWRDYH 66
>At5g39770.1 68418.m04817 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to MUS81
endonuclease (GI:16755674) [Mus musculus]; similar to
repair endonuclease (TIGR:At5g41150) [Arabidopsis
thaliana]
Length = 1242
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 245 RGXVPAQIVKLSIAI-AVYCTFGLQFFVCIDIMWNGIKDKFTKRPEL 382
RG V L I A C FG Q+F + + W G+ +P++
Sbjct: 177 RGRVSCDPFDLMICHRAETCYFGWQYFAKVALPWRGVGRALRAKPQV 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,360,834
Number of Sequences: 28952
Number of extensions: 156225
Number of successful extensions: 513
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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