Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0687.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    44   0.002
UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    38   0.13 
UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus lu...    33   2.7  
UniRef50_Q62IN0 Cluster: 30S ribosomal protein S15; n=32; Proteo...    33   3.6  
UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;...    32   6.2  

>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +1

Query: 76  GKCFR*CSSCDDPRISPLTSQYECPQ 153
           GKCFR C S ++ RISPLTS+Y+CPQ
Sbjct: 259 GKCFRSCLSPENLRISPLTSEYKCPQ 284


>UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep:
          Predicted protein - Nematostella vectensis
          Length = 79

 Score = 37.9 bits (84), Expect = 0.13
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = -1

Query: 67 FHQSRTKVRGSKAIRYRPSSN 5
          F   RTKVRGSK IRYRPSSN
Sbjct: 6  FRCQRTKVRGSKTIRYRPSSN 26


>UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus
          lucimarinus CCE9901|Rep: Predicted protein -
          Ostreococcus lucimarinus CCE9901
          Length = 72

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -1

Query: 67 FHQSRTKVRGSKAIRYRPSSN 5
          FH  RTKV GSK IRY PS N
Sbjct: 6  FHCQRTKVGGSKMIRYHPSLN 26


>UniRef50_Q62IN0 Cluster: 30S ribosomal protein S15; n=32;
           Proteobacteria|Rep: 30S ribosomal protein S15 -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 89

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = -1

Query: 451 EFAFGARAVGAPHPRVILTRXRSISSVTGRSKNAGSISKSYRGALR*VSRWADNFTLNKL 272
           +FA GA   G+P  +V L   R I+ +TG  K       S RG LR VSR        K 
Sbjct: 14  QFARGANDTGSPEVQVALLTAR-ITELTGHFKTHAKDHHSRRGLLRMVSRRRKLLDYLKG 72

Query: 271 ECSKRAKMLLE 239
           + + R + L+E
Sbjct: 73  KDADRYRALIE 83


>UniRef50_UPI0000F1F069 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 389

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 87  SLMFVLRRSKNFTSNVAIRMPPVIPINHYLG 179
           S+M V+ RS  FT    IR+PP+  I+H+LG
Sbjct: 20  SVMGVVERSAVFTRQRDIRLPPIPGISHHLG 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,151,945
Number of Sequences: 1657284
Number of extensions: 8976031
Number of successful extensions: 20361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20359
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)