Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0687.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 6.5
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 27 8.6
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) 27 8.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 64.9 bits (151), Expect = 4e-11
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = -2
Query: 117 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 44
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -2
Query: 99 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 61
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 99 RTSAKAFAKGVFINQERKLEVRRRLDT 19
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/35 (65%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ AK VFINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTI 42
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + VFINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTI 42
Score = 33.9 bits (74), Expect = 0.075
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + FINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 121 KFLDRRKTNISESICQRCFHQSRTKV 44
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + FINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + FINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 30.7 bits (66), Expect = 0.70
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 186 KTNKIEPRSYSIIPCTKYSSSIFARFEHSNLFKVKLSAHL 305
K + ++ Y+ + +S F RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 185 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 75
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 106 DDPRISPLTSQYEC 147
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 210 SYSIIPCTKYSSSIFARFEH 269
+Y IPCT Y+ ++++RF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146
>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
Length = 605
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 210 SYSIIPCTKYSSSIFARFEH 269
+Y IPCT Y+ ++++RF H
Sbjct: 58 TYRGIPCTNYTENLWSRFWH 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,264
Number of Sequences: 59808
Number of extensions: 287572
Number of successful extensions: 732
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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