Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0687.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             27   5.3  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   5.3  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    27   5.3  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   5.3  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   7.0  
At4g31630.1 68417.m04493 transcriptional factor B3 family protei...    27   9.3  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 106 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 5
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 69  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 203
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 105 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFARFEHSNLFK 284
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S  +      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 285 VKLSAHL 305
               AHL
Sbjct: 112 KAAEAHL 118


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 238 IQAAFLPALSTLICSK*NCRPTSTLTEEH 324
           +  +  P+ S L+C K +C   ST TE H
Sbjct: 385 VDTSLEPSASQLLCQKCHCAVKSTSTENH 413


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 248
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
           similar to reproductive meristem gene 1 from [Brassica
           oleracea var. botrytis] GI:3170424, [Arabidopsis
           thaliana] GI:13604227; contains Pfam profile PF02362: B3
           DNA binding domain
          Length = 512

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 282 KVKLSAHLDTHRRAPR*DFDIEPAFLERPVTDDMLRKRVSIT-RGCGAPTARAPNAN 449
           KVK +A  D H+ A R     + A L    TD+ + KR  +T  G  + + RA   N
Sbjct: 402 KVKQAASSDGHKTADRKPRMTDQAPLAEEQTDNRVEKRAQVTEEGGPSRSTRADPGN 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,848
Number of Sequences: 28952
Number of extensions: 199538
Number of successful extensions: 420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)