Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0686.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    22   4.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.9  

>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 274 VLLIFKLKSISVFQIPS 224
           ++LI+K+  +S F IP+
Sbjct: 49  IMLIYKIIQVSFFNIPN 65


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 117 SCNNFNMTVFFCVCVLMF 64
           SC++F    F C C + F
Sbjct: 414 SCSSFFQQFFHCYCPIKF 431


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 354 KFSPKQIQNSFNAE 395
           +F P QI+++FN E
Sbjct: 410 RFEPPQIRHAFNEE 423


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 340 IHNQTNSPPNKFKIAL 387
           +H Q N PP+K  IA+
Sbjct: 634 LHRQFNLPPSKDTIAV 649


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,672
Number of Sequences: 336
Number of extensions: 2712
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)