Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0686.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                         29   2.2  
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   3.8  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  28   6.6  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 254 QIDFCFSNSFHALNTHKNMYVLGESLFLSYLIIVLSFIYSELF 126
           +ID  F N F  LN  KN++    +  + + I+VLS+I S +F
Sbjct: 350 EIDETFEN-FVKLNDSKNIFNAARTPAVFFTIVVLSYILSSVF 391


>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 300 FFIK*YCHVFCSFSSSNRFLFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 136
           F I  YC +F   +  +  LF  +  C+ +    +   R  +F+++ YCS F L+
Sbjct: 40  FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 92



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 300 FFIK*YCHVFCSFSSSNRFLFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 136
           F I  YC +F   +  +  LF  +  C+ +    +   R  +F+++ YCS F L+
Sbjct: 140 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 192


>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -3

Query: 308 CFSFLLNSTVMCFAHFQAQIDFCFSNSFHALNTHKNMYVLGESLFLSYLIIVLSFIYSEL 129
           C+S+L  S  +C+++    +  C+S    +L    +    G  ++ SYL   +   YS L
Sbjct: 22  CYSYLSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRGMIVYYSYLSPSMIVCYSIL 81


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 300 FFIK*YCHVFCSFSSSNRFLFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL 136
           F I  YC +F   +  +  LF  +  C+ +    +   R  +F+++ YCS F L+
Sbjct: 139 FMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR--LFMIYAYCSLFVLI 191


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = -2

Query: 300 FFIK*YCHVFCSFSSSNRFLFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL*TFLM 121
           F I  YC +F   +  +  LF  +  C+ +    +   R  +F+++ YCS F L   +  
Sbjct: 239 FMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIIHAR--LFMIYAYCSLFCL--NYNC 294

Query: 120 NSCNNFNMTVFFCV 79
           +  + +++ V F V
Sbjct: 295 SRASVYDLRVLFFV 308


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 286  LFNKKEKHVLTPTLAF*DIHNQTNSPPNKFKIALMQKCP 402
            LFN+ E    +P LA  DI N    PP+K   AL Q CP
Sbjct: 3509 LFNR-EDITTSPLLA--DIKNTKFVPPHKVSEALSQLCP 3544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,399
Number of Sequences: 59808
Number of extensions: 283990
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)