Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0686.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    28   4.4  
AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical...    28   4.4  

>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 258 SSNRFLFFKFLPCTEYT*KYVCSGRIFIFILFNYCSFFYLL*TFLMNSCNNFNMTVFF 85
           S+N F F    P       + CS R  I I+ N+  F Y +   L+N CNN N+ +F+
Sbjct: 53  SANNFKFQPVPPQKCQPSSHWCSIRCAIIIVNNFFVFMYYIFLVLVNVCNN-NLLIFY 109


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -2

Query: 174 FILFNYCSFFYLL*T-----FLMNSCN-NFNMTVFFCV 79
           F++ +YCS  +   T     F +  C+ NF +T FFCV
Sbjct: 20  FVVCSYCSLLFYFFTVDFPYFFLTKCSLNFRITKFFCV 57


>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = -2

Query: 177 IFILFNYCSFFYLL*T---FLMNSCNNFNMTVFFCVCV---LMFCDLISL 46
           +F + N C   YL+ T    L  +C N   +  FC CV   +MF  L+ +
Sbjct: 53  VFCILNSCIDVYLMLTDSVILRQTCFNITFSTVFCYCVQSTIMFFILLDI 102


>AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.3 protein.
          Length = 252

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 186 RIFIFILFNYCSFFYL-L*TFLMNSCNNFNMTVFFCVCVLMFCDLISL*IFKDIIV 22
           ++ IFI F     +Y+ L T+  +S NN+N+ + F    +  C +I++     ++V
Sbjct: 148 KVSIFIFFTIMEVYYIYLCTWTNSSSNNYNI-IHFLPGTIYLCPIINIMSIPAVVV 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,871
Number of Sequences: 27780
Number of extensions: 248767
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)