Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0685.Seq
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    30   0.23 
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    29   0.40 
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    28   0.91 
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    26   4.9  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.9  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   6.4  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   8.5  

>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 599 SKPGFVEETIXXTAKKR-TNITANPVALLPKTRDT 498
           + PG + E +  + KKR TN  A P A LP T DT
Sbjct: 557 TSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDT 591


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 257 MPESSTRHNRYRLGR-RSSTKSL 192
           +PE+ST HN+Y LG   SST SL
Sbjct: 84  IPENSTLHNKYELGAVESSTSSL 106


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 209 SSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKR 60
           SS++  +  R  ++ CIG  ++   +  SSD +GRR  +  +Q   F+ +
Sbjct: 274 SSSQITKEIRDINFNCIGPYLSKIARKLSSDFEGRRQAKTVNQIRDFVSK 323


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 492 LQSSDPLVSPLFYPNFFSHPDDMIVAKD 409
           L ++D L + +F P   SHPD  + +KD
Sbjct: 200 LMTADNLAA-IFQPGILSHPDHEVYSKD 226


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 CHILILGSCFQIFFSNI 401
           CH  +L +C  I+FSN+
Sbjct: 35  CHYRVLPACLNIYFSNL 51


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 273 IRLHTDARIINSAQPLSAWSSILN 202
           IR+H    I+   QP+S W+ +L+
Sbjct: 754 IRIHVIGDILKLPQPISTWNKLLD 777


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 498 SIPCFWQER--HWIGCNIGPLLGSXXN-SLFH 584
           ++PCFW+E+   W G +I  L  S  + SLF+
Sbjct: 300 TVPCFWEEQFSSWYGPSISFLRSSQASQSLFN 331


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 432 DDMIVAKDGLRYLKKISESKILESEYG 352
           DD+ +  DG+ YL +I   +IL   +G
Sbjct: 124 DDIEIKPDGILYLPEIKYRRILNKAFG 150


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 560 AKKRTNITANPVALLPKTRDT 498
           AKKR    + P+ +LPK +DT
Sbjct: 328 AKKREGSPSLPIPILPKMKDT 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,658
Number of Sequences: 5004
Number of extensions: 48407
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)