Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0685.Seq
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08) 57 1e-08
SB_2678| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6) 31 0.72
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 29 3.8
SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85) 28 6.7
SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049) 28 6.7
SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 27 8.8
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 27 8.8
>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
Length = 79
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Frame = -1
Query: 247 HQLGTTAIG----LVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAFI 83
H +GT +G VVD +L+V G+ GLR++DAS+MP+ +GN + +M+AE+ AAFI
Sbjct: 18 HPVGTCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAEKAAAFI 76
>SB_2678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 215 RRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
R++ TK L+ + F+ YR H T G+SP+ +GR+ + FH H L+ R+
Sbjct: 25 RKNFTKKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKPRFHLLHPALRGRV 75
>SB_11739| Best HMM Match : DUF1545 (HMM E-Value=3.6)
Length = 540
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 257 MPESSTRHNRYRLGRRSSTKSLRNWR-FESYRCIGHAVTADGQSPSSDHDGRRARRGF 87
MP +TR ++ G+RSS ++LR ++ F R + V +G+S + H F
Sbjct: 446 MPRKTTRRQWHQAGQRSSNEALRPFKLFRGSRRLHEVVLFNGRSSRNLHTASSENEAF 503
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 28.7 bits (61), Expect = 3.8
Identities = 30/128 (23%), Positives = 54/128 (42%)
Frame = -2
Query: 390 KISESKILESEYGIELDPEATDECSETSEDWSDDWMECMIRLHTDARIINSAQPLSAWSS 211
K E + E EYG++ + EC + SE + DW + + DA +++ Q ++ S
Sbjct: 368 KAIEQALYEEEYGVKFN---LPECPK-SEGRTQDWKSAFLAMLEDAS-VSATQQINYMRS 422
Query: 210 ILN*KSTELEV*ELSMHRSCRHSRRAIPKQRS*WSPSEARLSSKTLIPKTTAVRVYEKNI 31
+ + L + +R +H R + W+ E R +I K R+ E
Sbjct: 423 FTSGEPQRL----VDSYRKRQH-RDPSTLLKELWAELEQRFGGPAVISKELLQRLRETAK 477
Query: 30 FENGNKDL 7
F G +D+
Sbjct: 478 F--GERDV 483
>SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)
Length = 272
Score = 27.9 bits (59), Expect = 6.7
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Frame = -2
Query: 297 SDDWMECMIRLHTDARIINSA-----QPLSAWSSIL----N*KSTELEV*ELSMHRSCRH 145
+D W+E +RL DA+ SA Q S W +L + K + E L M++ CR
Sbjct: 37 ADTWLE--VRL-PDAKTAQSAMSAVIQLRSTWMRLLQLRLDAKRSGSETGLLEMNK-CRD 92
Query: 144 SRRAIPKQRS*WSPSEARLSSKTLIP 67
RA+ K+ S + S R S++ L+P
Sbjct: 93 LERALAKKLSEFLDSNIRFSTRRLLP 118
>SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049)
Length = 764
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 107 RRARRGFHQRHSFLKRRLFVFTKKTYLKMEIKT 9
RRA + FHQ S L+ R F+ +T+L I+T
Sbjct: 290 RRAVQEFHQLDSNLQVRQFLLETRTFLHQMIRT 322
>SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 224 RLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
R R T L+ + F+ YR H T G+SP+ +GR+ + F H L+ R+
Sbjct: 18 RASGRDLTTKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKTRFDLLHPALRGRV 71
>SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.5 bits (58), Expect = 8.8
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = -3
Query: 272 SDCTLMPESSTRHNR---YRLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDH---D 111
+D + ++ H R YR R + T+ R ++ GHA T ++ +
Sbjct: 190 TDAVMRIDAKAMHGRRGAYRRKRHARTQGARTNAKGTHGRRGHAQTQRARTDAVVRIYAK 249
Query: 110 GRRARRGFHQRHSFLKRRLFVFTKK 36
G RRG H+R S + R V T+K
Sbjct: 250 GMHGRRGAHRRKSHARTRGCVQTQK 274
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 224 RLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
R R T L+ + F+ YR H T G+SP+ +GR+ + F H L+ R+
Sbjct: 145 RASGRDLTTKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKTRFDLLHPALRGRV 198
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 224 RLGRRSSTKSLRNWRFESYRCIGHAVTADGQSPSSDHDGRRARRGFHQRHSFLKRRL 54
R R T L+ + F+ YR H T G+SP+ +GR+ + F H L+ R+
Sbjct: 894 RASGRDLTTKLQRFLFQ-YRVTPHTTT--GRSPAELLNGRKLKTRFDLLHPALRGRV 947
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Frame = -2
Query: 441 SHPDDMIVAKDGLRY-----LKKISESKI--LESEYGIE-----LDPEATDECSE 313
SH ++M ++ RY L + SESK+ L + G+E L+ E TDECS+
Sbjct: 469 SHEENMSISGSNARYMVMQKLSRKSESKVMVLRNMVGVEDLDEDLEHEVTDECSK 523
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,780
Number of Sequences: 59808
Number of extensions: 371213
Number of successful extensions: 1068
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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