Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0685.Seq
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AC024757-3|AAF59448.2|  414|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    29   3.4  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   4.5  
CU457737-1|CAM36322.1|  373|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF003384-9|AAL08041.1|   42|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    27   7.8  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = -1

Query: 217 VVDPQ-LKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAERGAAFIK 80
           VV+P+ + VYG   L+V+DASVMPS  +GN  A ++M+AER A  IK
Sbjct: 536 VVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLIK 582



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -2

Query: 516 AKNKGYLTLQSSDPLVSPLFYPNFFSHPDDMIVAKDGLRYLKKISESKILESEYGIELDP 337
           +++KGY+ LQ+ DP  +P+  PN+     D    +  +R  +++  SK  +   G EL P
Sbjct: 438 SQSKGYIMLQAKDPRRAPIINPNYMEEDSDWREFRKCIRVSRELFASKAFDEFRGKELAP 497


>AC024757-3|AAF59448.2|  414|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.6 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 432 DDMIVAKDGLRYLKKISESKI-LESEYGIELDPEATDECSETSEDWS 295
           DD +V ++ L   K ++ +KI L +   +     A DE  ETS +W+
Sbjct: 276 DDQVVYEEELEAAKTLALTKIMLSNSMNVSFQVTAIDENGETSSEWT 322


>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 435 PDDMIVAKDGLRYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWME 280
           P  MI  KDG R   ++++  +L S+ G E+D E   E      D  D + +
Sbjct: 371 PIPMIQTKDGKRVAVQLNKLPVLGSDRGQEVDKERFGESGVFDTDTLDTFFD 422


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 435 PDDMIVAKDGLRYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWME 280
           P  MI  KDG R   ++++  +L S+ G E+D E   E      D  D + +
Sbjct: 402 PIPMIQTKDGKRVAVQLNKLPVLGSDRGQEVDKERFGESGVFDTDTLDTFFD 453


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 435 PDDMIVAKDGLRYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWME 280
           P  MI  KDG R   ++++  +L S+ G E+D E   E      D  D + +
Sbjct: 371 PIPMIQTKDGKRVAVQLNKLPVLGSDRGQEVDKERFGESGVFDTDTLDTFFD 422


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 330  TDECSETSEDWSDDWMECMIRLHTDARIINSAQPLSAWSSILN 202
            T +  + S+ W + W+   +  +T   ++NSA+P    + + N
Sbjct: 890  TRDMQQASDKWINKWILIAVNSNTSYLLVNSARPADFVAGVTN 932


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 330  TDECSETSEDWSDDWMECMIRLHTDARIINSAQPLSAWSSILN 202
            T +  + S+ W + W+   +  +T   ++NSA+P    + + N
Sbjct: 890  TRDMQQASDKWINKWILIAVNSNTSYLLVNSARPADFVAGVTN 932


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 330  TDECSETSEDWSDDWMECMIRLHTDARIINSAQPLSAWSSILN 202
            T +  + S+ W + W+   +  +T   ++NSA+P    + + N
Sbjct: 890  TRDMQQASDKWINKWILIAVNSNTSYLLVNSARPADFVAGVTN 932


>CU457737-1|CAM36322.1|  373|Caenorhabditis elegans Hypothetical
           protein C52D10.1 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 306 EDWSDDWMECMIRLHT-DARIINSAQPLSAWSSILN 202
           ++  DDW +C I L T  A +  S  PLS  S+ LN
Sbjct: 51  QNTGDDWKDCDIVLSTCSASLGGSPPPLSTLSATLN 86


>AF003384-9|AAL08041.1|   42|Caenorhabditis elegans Hypothetical
           protein K07B1.6b protein.
          Length = 42

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 129 PKQRS*WSPSEARLSSKTLIP 67
           PKQ + W PS+ ++SS+ L+P
Sbjct: 16  PKQATSWIPSDWKISSRELVP 36


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 242 TRHNRYRLGRRSSTKSLRNWRFE 174
           TR+ +YRL   S  K +R W FE
Sbjct: 25  TRNGKYRLATASVQKEVRVWEFE 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,477,296
Number of Sequences: 27780
Number of extensions: 276896
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)