Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0685.Seq
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 49 3e-06
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 47 1e-05
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 46 3e-05
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 46 3e-05
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 45 3e-05
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 44 6e-05
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 44 8e-05
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 42 3e-04
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 29 3.1
At2g42120.2 68415.m05210 DNA polymerase delta small subunit-rela... 29 3.1
At2g42120.1 68415.m05209 DNA polymerase delta small subunit-rela... 29 3.1
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ... 27 9.6
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta... 27 9.6
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD KV GI GLRVID S P NPQA +MM+
Sbjct: 534 HYHGGCQVGKVVDKNYKVLGIDGLRVIDGSTFLKSPGTNPQATVMML 580
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -2
Query: 510 NKGYLTLQSSDPLVSPLFYPNFFSHPDDMIVAKDGLRYLKKISESK 373
+KG++ L++++P +P N++ P+D+ GL + ++ SK
Sbjct: 439 SKGHMKLRNTNPRDNPSVTFNYYQEPEDLNKCVKGLNTIIRMINSK 484
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD LKV G+ LR++D S P NPQA +MM+
Sbjct: 492 HYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLMML 538
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -2
Query: 504 GYLTLQSSDPLVSPLFYPNFFSHPDDMIVAKDGLRYLKKISESKILE 364
G L L S+D ++P+ N+FS P D+ +G R + +I S+ ++
Sbjct: 403 GLLRLASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQ 449
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD KV G+ LR+ID S P NPQA IMM+
Sbjct: 509 HYHGGCQVGKVVDNNYKVLGVDALRIIDGSTFLKSPGTNPQATIMML 555
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = -2
Query: 510 NKGYLTLQSSDPLVSPLFYPNFFSHPDDMIVAKDGLRYLKKISESK 373
++G+L L++++P +P N+F P+D+ +GL + K+ +SK
Sbjct: 414 SRGHLELRNTNPDDNPSVTFNYFKDPEDLNKCVEGLSTIIKVIDSK 459
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VV P KV G+ LRVID S P NPQA +MM+
Sbjct: 529 HYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMM 575
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD +V GI LRVID S P NPQA +MM+
Sbjct: 518 HYHGGCQVGRVVDKNYRVLGIDSLRVIDGSTFLKSPGTNPQATVMML 564
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = -2
Query: 510 NKGYLTLQSSDPLVSPLFYPNFFSHPDDMIVAKDGLRYLKKISESK 373
++G+L L++++P +P N++ P+D+ + +G+ + K+ SK
Sbjct: 423 SRGHLELRNTNPDDNPSVRFNYYQEPEDLQICVEGINTIIKVINSK 468
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAE-RGAAFIKDTH 71
H G +G VVD + KV G+ LRV+D S P NP A ++M+ +G +K+
Sbjct: 425 HYHGGCVVGSVVDEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLMLGRYQGIKILKERE 484
Query: 70 S*ND 59
D
Sbjct: 485 EQED 488
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMV 107
H G +G VVD KV GI LRVID S + P NPQA +MM+
Sbjct: 510 HYHGGCVVGRVVDGDYKVIGIDRLRVIDMSTVGYCPGTNPQATVMML 556
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = -2
Query: 504 GYLTLQSSDPLVSPLFYPNFFSHPDDMIVAKDGLRYLKKISESK 373
G+L L++ +P +P+ N+F HPDD+ G++ ++++ +SK
Sbjct: 413 GHLELKTRNPKDNPIVTFNYFQHPDDLKRCVRGIQTIERVVQSK 456
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 247 HQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVAE-RGAAFIKD 77
H G +G VV+ + KV G+ LRV+D S P NP A ++M+ +G +K+
Sbjct: 445 HYHGGCVVGSVVNEEYKVNGVKRLRVVDGSTFEESPGTNPMATVLMLGRYQGIKILKE 502
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 140 DGQSPSSDHDGRRARRGFHQRHS 72
D + SD DG RA RGFH S
Sbjct: 98 DDEEDGSDEDGARAARGFHASSS 120
>At2g42120.2 68415.m05210 DNA polymerase delta small subunit-related
similar to DNA polymerase delta small subunit SP:Q9LRE5
from [Oryza sativa]
Length = 440
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 486 SSDPLVSPLFYPNFFSHPDDMIVAKD 409
S + V+PL P+ F HPDD ++ +D
Sbjct: 96 SKERSVTPLVKPHNFMHPDDNLILED 121
>At2g42120.1 68415.m05209 DNA polymerase delta small subunit-related
similar to DNA polymerase delta small subunit SP:Q9LRE5
from [Oryza sativa]
Length = 441
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 486 SSDPLVSPLFYPNFFSHPDDMIVAKD 409
S + V+PL P+ F HPDD ++ +D
Sbjct: 97 SKERSVTPLVKPHNFMHPDDNLILED 122
>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
long chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 748
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 265 AH*CQNHQLGTTAIGLVVDPQLKVYGIGGLRVIDASVMPSQPTGNPQAAIMMVA 104
AH + ++G TA +D + + GL V D S++PS NP I A
Sbjct: 678 AHQMGSCRMGVTAEEGALDENGESWEAEGLFVCDGSILPSAVGVNPMITIQSTA 731
>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 661
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 432 QDVRRNSDKIMEKLVGLKTATLSIPCFWQERHWIGCN 542
+ V+ S +M +L+ T ++ CF WIGC+
Sbjct: 555 EKVKSGSRLVMGRLLAPGEGTYNLTCFCLSDTWIGCD 591
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 402 RYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWMECMIRLHTDARI 247
R + ++ E + E EL+ E ECS T+ + + + I+L TDA +
Sbjct: 586 REVAEVIEKLKTQEEDTAELEDEDEGECSGTTPEEDSEQPKKRIKLDTDATV 637
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 402 RYLKKISESKILESEYGIELDPEATDECSETSEDWSDDWMECMIRLHTDARI 247
R + ++ E + E EL+ E ECS T+ + + + I+L TDA +
Sbjct: 589 REVAEVIEKLKTQEEDTAELEDEDEGECSGTTPEEDSEQPKKRIKLDTDATV 640
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,218
Number of Sequences: 28952
Number of extensions: 259553
Number of successful extensions: 741
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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