Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0684.Seq
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   100   1e-22
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   100   2e-22
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   1.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   2.8  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   3.7  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   3.7  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   8.6  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   8.6  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    25   8.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   8.6  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  100 bits (240), Expect = 1e-22
 Identities = 47/68 (69%), Positives = 55/68 (80%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAG+ THLM+R++   VRGIS KLQEEERER+D YVPEVS LE D I VD DTKDML
Sbjct: 47  RNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDML 106

Query: 72  KMLDFNNI 49
           K L +++I
Sbjct: 107 KALGYDSI 114



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY RLTLDF TNKRI +E+AII +K L  K+
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKI 50


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  100 bits (239), Expect = 2e-22
 Identities = 49/79 (62%), Positives = 60/79 (75%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAG+ THLM+R++   VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDML
Sbjct: 47  RNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDML 106

Query: 72  KMLDFNNINGLQLTQPATQ 16
           K L ++ I  +++  PA Q
Sbjct: 107 KSLGYDQI-PVRVLAPAPQ 124



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY RLTLDF TNKRI +E+AII +K L  K+
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKI 50


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 37  LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 198
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -1

Query: 303 YK*KNM*RNRYHSYQAFRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVS 124
           Y+ ++   +R H Y  + +      +H  +R R S+ R  S KL EEER+RR  +V +++
Sbjct: 191 YEERSSRSSRAHDYD-YEDLRDDDRSHERKRSR-SRPRERSSKLSEEERDRRTVFVSQLA 248


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 201 SQVRGISIKLQEEERERRDNYVPEV 127
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +1

Query: 238 SNFIP-KGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 363
           S+F+  +G+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 346 SDFLKNRGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 73  QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 186
           Q  L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 326 TRLTLDFDTNKRICEEIAIIPTKPLGIKLLDLPH 225
           TR   +FD   R C   +  P  P      DLPH
Sbjct: 130 TRFHDEFDRESRACLHRSEFPKNPHAFLAQDLPH 163


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -1

Query: 273 YHSYQAFR--NKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEH 112
           YH + + R   +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    
Sbjct: 364 YHQWHSLRIREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQ 423

Query: 111 DIIEV 97
           + +EV
Sbjct: 424 ESVEV 428


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -1

Query: 276 RYHSYQAFRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 115
           +Y  +  FR+      T  MRR+ +    G  +  ++E+  + + YV +++  E
Sbjct: 24  KYRPWNDFRSDTLTVPTDEMRRIMYEASDGDCVYEEDEDTRKLEVYVAKLTGKE 77


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 505 NGRPVNCNTTHYRANWVPGPPSRSTVSISLISNSR 401
           NG+P+  + T   ++  P P ++ +    L  NSR
Sbjct: 122 NGKPIEASQTEESSSTPPSPATKKSSKQRLTMNSR 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,418
Number of Sequences: 5004
Number of extensions: 42543
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)