Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0684.Seq
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 90 1e-18
03_01_0066 - 537729-538163 90 1e-18
03_02_0943 + 12598616-12598789,12599790-12601250 31 0.54
06_01_0889 - 6807449-6809257 30 1.7
07_01_0358 - 2631214-2632992 29 2.9
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 6.7
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 27 8.9
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 27 8.9
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322... 27 8.9
>10_07_0174 + 13815478-13815903
Length = 141
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/82 (53%), Positives = 58/82 (70%)
Frame = -1
Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
RNK+AGF THLMRR++ VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML
Sbjct: 47 RNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEML 106
Query: 72 KMLDFNNINGLQLTQPATQGGY 7
L ++ G++ Q + Y
Sbjct: 107 AALGMADLPGVERQQEVSAPTY 128
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -2
Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
IEKYY+R+TLDF TNK++ EE++I+P+K L K+
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKV 50
>03_01_0066 - 537729-538163
Length = 144
Score = 89.8 bits (213), Expect = 1e-18
Identities = 45/76 (59%), Positives = 58/76 (76%)
Frame = -1
Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
RNK+AGF+THLMRR++ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML
Sbjct: 47 RNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDML 106
Query: 72 KMLDFNNINGLQLTQP 25
L ++ G+ + QP
Sbjct: 107 TSLGMADLPGV-VRQP 121
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -2
Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
IEKYY+R+TLDF TNK++ EE++I+P+K L K+
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKV 50
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 240 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 61
A +++HL+RR+ + K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 41 AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>06_01_0889 - 6807449-6809257
Length = 602
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 210 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 88
LRH Q R I ++ + R R + YVP+ HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528
>07_01_0358 - 2631214-2632992
Length = 592
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 282 RNRYHSYQAFRNKIAGFATHLMRRLRHSQVRGISIKLQE-EERERRDNYVPEVSALEHDI 106
+N HS RN + F +M H + I L E ER RR+ Y+P S + DI
Sbjct: 456 KNPGHSLVELRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADI 512
Query: 105 IEVDPDT 85
E + +T
Sbjct: 513 EEEEKET 519
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 186 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 64
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 2 PP*PPWVAGCVSCR----PLILLKSSIFNISLVSGSTSMMSC 115
PP PP VS R PL+ L+ + N S VSGS S +C
Sbjct: 5 PPSPPRSLTSVSLRTPLSPLLFLRPASCNPSAVSGSCSSGAC 46
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 204 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 88
H Q + I KL E R R+ Y PEV A HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590
>01_01_0425 +
3221303-3222602,3222710-3222928,3223010-3223114,
3223274-3223403,3223524-3224464,3224971-3225257
Length = 993
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 5 P*PPWVAGCVSCRPLILLKSSIF 73
P PPW+ C S L+L S +
Sbjct: 387 PIPPWIRNCTSLESLVLFNCSFY 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,337
Number of Sequences: 37544
Number of extensions: 288747
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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