Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0684.Seq
         (612 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   140   2e-33
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   140   2e-33
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   140   2e-33
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   140   2e-33

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  140 bits (338), Expect = 2e-33
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+ML
Sbjct: 47  RNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEML 106

Query: 72  KMLDFNNINGLQLTQPAT 19
           K+LDF+NI GLQLTQP T
Sbjct: 107 KLLDFHNIRGLQLTQPNT 124



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYYTRLTLDF TNKRICEE+AIIPTKPL  K+
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  140 bits (338), Expect = 2e-33
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+ML
Sbjct: 47  RNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEML 106

Query: 72  KMLDFNNINGLQLTQPAT 19
           K+LDF+NI GLQLTQP T
Sbjct: 107 KLLDFHNIRGLQLTQPNT 124



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYYTRLTLDF TNKRICEE+AIIPTKPL  K+
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  140 bits (338), Expect = 2e-33
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+ML
Sbjct: 47  RNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEML 106

Query: 72  KMLDFNNINGLQLTQPAT 19
           K+LDF+NI GLQLTQP T
Sbjct: 107 KLLDFHNIRGLQLTQPNT 124



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYYTRLTLDF TNKRICEE+AIIPTKPL  K+
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  140 bits (338), Expect = 2e-33
 Identities = 67/78 (85%), Positives = 71/78 (91%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAG+ THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+ML
Sbjct: 47  RNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEML 106

Query: 72  KMLDFNNINGLQLTQPAT 19
           K+LDF+NI GLQLTQP T
Sbjct: 107 KLLDFHNIRGLQLTQPNT 124



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYYTRLTLDF TNKRICEE+AIIPTKPL  K+
Sbjct: 17  IEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,513,325
Number of Sequences: 53049
Number of extensions: 475830
Number of successful extensions: 1238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)