Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0684.Seq
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    92   3e-19
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   1.1  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   3.5  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   4.6  
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   6.0  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 45/69 (65%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHD---IIEVDPDTK 82
           RNKIAG+ THLMRR+    VRGISIKLQEEERERRDNY+PE+S ++      I+VD DT 
Sbjct: 47  RNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTS 106

Query: 81  DMLKMLDFN 55
           DMLK   FN
Sbjct: 107 DMLKAAGFN 115



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 28/34 (82%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYYTR+T DF  NKR+C+E+AII +KPL  K+
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKI 50


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 215 GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 123
           G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 652 GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 242 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 102
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -1

Query: 192 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 34
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = -1

Query: 258  AFRNKIAGFAT-HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 82
            A+++KI  +A  ++++ +R  Q R    KL+  E ER++    +    +++ + ++P   
Sbjct: 1588 AWKHKIMDYAMPYMIQVMRDYQTR--LEKLERSEHERKEE---KAEQQQNNGMTMEPQL- 1641

Query: 81   DMLKMLDFNNINGLQLTQPATQGGYGG 1
                ML +      Q+T P T GGYGG
Sbjct: 1642 ----MLTYG-APAPQMTYPGTTGGYGG 1663


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 238 WICHTFNEASQTLASARNLYQTSGRGA 158
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,859,678
Number of Sequences: 27780
Number of extensions: 240955
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)