Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0684.Seq
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)            90   9e-19
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...    89   2e-18
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...    89   2e-18
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)            88   5e-18
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...    87   9e-18
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    32   0.26 
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    29   3.2  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    29   3.2  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    27   7.4  

>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 41/76 (53%), Positives = 59/76 (77%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML
Sbjct: 47  RNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEML 106

Query: 72  KMLDFNNINGLQLTQP 25
             L  ++ +G+   +P
Sbjct: 107 ASLGMSDTSGISAVEP 122



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY+R+TLDF TNK+I EE+AIIP+K L  K+
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 41/76 (53%), Positives = 58/76 (76%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML
Sbjct: 47  RNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEML 106

Query: 72  KMLDFNNINGLQLTQP 25
             L  ++  G+   +P
Sbjct: 107 ASLGMSDTPGISAVEP 122



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY+R+TLDF TNK+I EE+AIIP+K L  K+
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 41/76 (53%), Positives = 58/76 (76%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML
Sbjct: 47  RNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEML 106

Query: 72  KMLDFNNINGLQLTQP 25
             L  ++  G+   +P
Sbjct: 107 ASLGMSDTPGISAVEP 122



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY+R+TLDF TNK+I EE+AIIP+K L  K+
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 41/76 (53%), Positives = 57/76 (75%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML
Sbjct: 47  RNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEML 106

Query: 72  KMLDFNNINGLQLTQP 25
             L  ++  G+    P
Sbjct: 107 ASLGMSDTLGISAVDP 122



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY+R+TLDF TNK+I EE+AIIP+K L  K+
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 40/71 (56%), Positives = 57/71 (80%)
 Frame = -1

Query: 252 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 73
           RNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML
Sbjct: 47  RNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEML 106

Query: 72  KMLDFNNINGL 40
             L  ++I G+
Sbjct: 107 ASLGMSDIAGI 117



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -2

Query: 341 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLGIKL 240
           IEKYY+R+TLDF TNK+I EE+AIIP+K L  K+
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 228 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 73
           T L+    H +   + I LQ+  +E RR  YVP+ S + HD +E D   +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 26  GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 133
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 26  GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 133
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 180 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 88
           +K  EEE   R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,244,055
Number of Sequences: 28952
Number of extensions: 225723
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)