Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0682.Seq
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 35 0.011
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 33 0.043
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 28 1.2
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 28 1.2
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 27 2.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.8
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 3.8
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 3.8
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 5.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 8.7
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 270 ENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAI 383
E+ W+ PF+ +DN G++F RG+ D K I ++ AI
Sbjct: 106 EDGWSTDPFTLTVDNKGRMFGRGATDDKGPLIGWISAI 143
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 32.7 bits (71), Expect = 0.043
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 255 VVPVFENS---WTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAI 383
VVPV + S W +PPFS N G +++RG+ D K + LEA+
Sbjct: 200 VVPVNQASLDRWYFPPFSATYHN-GHVYSRGAADDKNSVVAILEAL 244
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 261 PVFENSWTYPPFSGH 305
P F++S TYPPFS H
Sbjct: 330 PKFQSSATYPPFSAH 344
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 316 SLSMCPL-NGGYVQLFSKTGTTPYANSIILPADLVLFRSMSKRRSVSSARPRIFLRLNQF 140
SL CP N Q +K G Y NS+ P+++ + + +R ++++R L +
Sbjct: 36 SLQKCPACNKHCRQYCTKPGYDIYGNSVQTPSNVPYYSCLMCKREIAASRYAAHLEKCKG 95
Query: 139 RSL 131
RSL
Sbjct: 96 RSL 98
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -2
Query: 140 SFACLVKNLTQSL*SMFGWTLGIFKY 63
S+AC VKN QSL F WTL F Y
Sbjct: 251 SYACTVKNKEQSL--DFRWTLIPFLY 274
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 117 ILNETSERNWFSRKN--IRGRADETDRRFDMDRKRTKSAGNIIEFAYGVVPVFENS 278
I N+ E +RKN IRG D + + +K+ KSA N + + + EN+
Sbjct: 496 INNQCLELEALNRKNDLIRGELDSLKEKNLVAQKQLKSANNTLHVRAKHIQILENT 551
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 16 MASTYQ-NNPSIANFVEYLKIP--SVQPNIDYSDCVKFLTRQANEIGLAVKIYEVV 174
+ S Y+ +NPS A F+++ P ++ P YS+ V F A IGL + E +
Sbjct: 628 LLSFYEYSNPS-ATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETL 682
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 482 QISPCHHXRRFLRQERRKYEEFFSMQLGGFQFPYRF*ILDTNA 354
Q P H+ + F Y+E SM+L G Q RF D NA
Sbjct: 6 QEEPVHYVQWFYLSNYDLYDETSSMELTGAQSWRRFLNYDNNA 48
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 430 NMKSSFQCNLAAFNFLIASKYWIPTHFMS 344
N QC FN +I S+Y++P S
Sbjct: 929 NENEILQCVCCRFNLIIGSEYYVPQSHQS 957
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 164 YIFTAKPISFACLVKNLTQSL*SMFGWTLGIFKYSTKLAIDGLF 33
Y + P + A K L ++ S GW +G+F +K + F
Sbjct: 17 YSGSLSPSAIAATEKELQKAQRSQQGWNIGLFMLQSKDVYEQFF 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,393
Number of Sequences: 5004
Number of extensions: 56976
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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