Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0682.Seq
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 72 4e-13
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 64 6e-11
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 32 0.42
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429... 31 0.55
09_04_0458 + 17772075-17772569,17772729-17773187,17773549-17773650 29 2.2
07_01_1039 - 9037689-9038225,9038831-9040627 29 2.2
03_06_0313 + 33073542-33074464,33074901-33075069 29 2.2
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 29 2.9
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532... 28 5.1
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 5.1
05_03_0651 + 16605662-16605722,16605920-16606185 27 8.9
05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513 27 8.9
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +1
Query: 46 IANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPNL 225
++ F EYL+I + QP DY+ V FL QA GL + E+V KP+++L W G+ P+L
Sbjct: 31 VSRFREYLRIDTAQPAPDYAAAVAFLRGQAGAAGLEARTLELVAGKPLLLLRWPGRRPSL 90
Query: 226 PAILLNSHMEL 258
P++LLNSH ++
Sbjct: 91 PSLLLNSHTDV 101
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +2
Query: 416 RTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMAS 544
R ++++FVPDEEIGGH+G+E FV EFK + + + +G+AS
Sbjct: 186 RNIYLTFVPDEEIGGHEGIEAFVASKEFKDMNVGLVLDEGLAS 228
Score = 36.3 bits (80), Expect(2) = 3e-06
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDN-DGKIFARGSQ 344
VVP + W +PPFS +D G+I+ARGSQ
Sbjct: 101 VVPSEPHKWDHPPFSAALDEASGRIYARGSQ 131
Score = 32.3 bits (70), Expect(2) = 3e-06
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 345 DMKCVGIQYLEAIR 386
DMKCVG+QYLEAIR
Sbjct: 162 DMKCVGMQYLEAIR 175
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +1
Query: 19 ASTYQNNPSIANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVP--TKPIV 192
A T + I F +YL+I + P+ DY+ FL A +GL P +KP++
Sbjct: 32 AFTELESAQIGRFQDYLRIRTAHPSPDYAGAAAFLLPYAASLGLRAATLHFTPCKSKPLL 91
Query: 193 VLTWTGKEPNLPAILLNSHME 255
+LTW G +P+LP++LLNSH++
Sbjct: 92 LLTWPGTDPSLPSLLLNSHLD 112
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 258 VPVFENSWTYPPFSGHIDN-DGKIFARGSQDMKCVGIQYLEAIR 386
VP W +PPF+ H D G+++ARG+QD KC+ IQYLEAIR
Sbjct: 114 VPAEPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIR 157
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +2
Query: 416 RTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMAS 544
RTLHIS VPDEEIGG DG EKF + EF+ L + + +G AS
Sbjct: 168 RTLHISLVPDEEIGGADGFEKFAQSEEFRDLNVGFMLDEGQAS 210
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +1
Query: 85 QPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPNLPAILLNSHMELCR 264
+P+IDYS + R ANE V + ++V W +E L I L E+ R
Sbjct: 79 KPHIDYSSTICDPFRHANEFAPTVGFFLTTHPSEVIVRKWHAQEERL--IKLPEEEEI-R 135
Query: 265 FSKTVGH 285
+S+ V H
Sbjct: 136 YSEAVRH 142
>01_06_1088 -
34439311-34439987,34440080-34440136,34442790-34442919,
34443499-34443740,34443857-34444008,34444381-34444461,
34444547-34444612,34444692-34444763,34444843-34444984,
34445146-34445645,34446625-34447192,34447248-34447257
Length = 898
Score = 31.5 bits (68), Expect = 0.55
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = -3
Query: 466 IMXADFFVRNEGNMKSSFQCNLAAFNFLIASKYWIPTHFMSWEPLAKIFPS-LSMCPLNG 290
++ A F N + SS + +L F I +W + W+P + ++ +++ P
Sbjct: 80 LIRATFTYGNYDGLNSSEKGSLFIFGLHIGVNFWTTVNLTKWDPSSTVWKEVITVAPDKS 139
Query: 289 GYVQLFSKTGTTPYANSIIL-PADLVLFRSMSKRRSVS 179
V L + TP+ +++ L P ++ ++ SVS
Sbjct: 140 VSVCLINMGSGTPFISTLDLRPLQDTMYPFVNASTSVS 177
>09_04_0458 + 17772075-17772569,17772729-17773187,17773549-17773650
Length = 351
Score = 29.5 bits (63), Expect = 2.2
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Frame = -3
Query: 424 KSSFQC---NLAAFNFLIASKYWIPTHFMSWE----PLAKIFPSLSMCPLNGGYVQLFSK 266
KSS QC + AA AS + P + MS P+A + L G
Sbjct: 193 KSSRQCAAHDAAAAAAPFASFFTFPQYSMSAAAAAAPVAPVVNELHGRDDGGAGTAEAEA 252
Query: 265 TGTTPYANSIILPADLVLFRSMSKRRSVSSARPRIFLRLNQFRSLVSLRI*RNHCNQCSV 86
+G+ P S + ++ + S + R +S RPR LRL +L R+ H N S
Sbjct: 253 SGSKP---SAVADVEVTMVESHANLRVLSRRRPRQLLRL--VVALQGHRLTVLHLNMTSA 307
Query: 85 GHWVFSS 65
GH V S
Sbjct: 308 GHMVLYS 314
>07_01_1039 - 9037689-9038225,9038831-9040627
Length = 777
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 399 RLSISLSLLNIGYQRISCLGSPLRKSFHRC-LCVR 298
RLS S+ + N+G +R S P+R +F C +CV+
Sbjct: 519 RLSFSVRICNVGEERYSLDWIPMRPTFSGCNVCVK 553
>03_06_0313 + 33073542-33074464,33074901-33075069
Length = 363
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 547 GRCHSFHPKRNQYE-SFKFI-HFNKFLHAIMXADFFVRNEGNMKSSFQCN 404
G+CH PK+ S F+ HF L ++ +DFF N G + ++C+
Sbjct: 267 GKCHC--PKKKSVSISPPFLGHFCHDLDRVLASDFFAGNPGRRRGYYRCS 314
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVG 362
VVP + W + PFS D++ K RG C+G
Sbjct: 102 VVPANPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLG 137
>09_04_0408 +
17352110-17352619,17352709-17352834,17353036-17353209,
17353669-17353830,17353998-17354140,17354835-17354910,
17355445-17355589,17355847-17355896,17356001-17356078,
17357153-17357314,17357406-17357669,17357929-17358033,
17358158-17358247,17358344-17358346
Length = 695
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -2
Query: 320 SIVVYVSAKRWICPTVFENRH-----NSICEFNNIAGRFGSFPVHVKTTIGFVGT 171
SIV YV AK W+CP F+ H +SI E N A F + TT+ ++ T
Sbjct: 68 SIVDYV-AKIWVCPFCFQRNHFPQHYSSISESNLPAELFPQY-----TTVEYIST 116
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 22 STYQNNPSIANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLA 153
+T +NN ++ N + L+ PSV P Y+ C+ Q N +G A
Sbjct: 4774 ATLRNNETLCNCIFPLRGPSVPPG-QYTRCLDQYWDQLNSLGRA 4816
>05_03_0651 + 16605662-16605722,16605920-16606185
Length = 108
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 305 VSAKRWI--CPTVFENRHNSICEFNNIAGR 222
V KRW CP V ++H FN++ GR
Sbjct: 71 VDPKRWYRRCPRVMNSQHRHYHPFNHLLGR 100
>05_03_0080 - 8245082-8246656,8246657-8246935,8247502-8247513
Length = 621
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 109 CVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPNLPAILLNSHMELCRFSKTVGHI 288
C K++ + E+ L++ +Y+++ TK +++ TW G + + + F T H
Sbjct: 210 CEKYVKAKIIELELSM-MYDILYTKAMILQTWIGCILRCISHIA-MVVAFVLFLVTPKHG 267
Query: 289 HRLADT*TTMERFS 330
HR+AD T F+
Sbjct: 268 HRMADVAITYTLFA 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,251
Number of Sequences: 37544
Number of extensions: 342561
Number of successful extensions: 805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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