Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0682.Seq
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09) 35 0.046
SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10) 31 0.98
SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05) 31 0.98
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 29 3.0
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 29 3.0
SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1) 28 5.2
SB_38512| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_22856| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_55055| Best HMM Match : rve (HMM E-Value=4.8e-05) 28 6.9
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14) 27 9.1
>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
Length = 702
Score = 35.1 bits (77), Expect = 0.046
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
VVP SW PPF G + DG I+ RG+ D+K + LEA++
Sbjct: 470 VVPA-PGSWDVPPFDGRV-KDGYIWGRGTLDVKNGVMASLEAVQ 511
>SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)
Length = 340
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = -2
Query: 329 ENLSIVVYVSAKRWICPTVFENRHNSICEFNNIAGRFGSFPVHVKTTIGFVGTTSYIFTA 150
E S+++ + W+ P + + + C NNI G F V + + + IF
Sbjct: 146 EKRSVLIILLLVSWVLPGLLNSSTFAFCAANNIGGTFQCLCVFTMQSAIYAVAANVIFVL 205
Query: 149 KPISFACL 126
I CL
Sbjct: 206 LVIVILCL 213
>SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05)
Length = 253
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = -2
Query: 329 ENLSIVVYVSAKRWICPTVFENRHNSICEFNNIAGRFGSFPVHVKTTIGFVGTTSYIFTA 150
E S+++ + W+ P + + + C NNI G F V + + + IF
Sbjct: 74 EKRSVLIILLLVSWVLPGLLNSSTFAFCAANNIGGTFQCLCVFTMQSAIYAVAANVIFVL 133
Query: 149 KPISFACL 126
I CL
Sbjct: 134 LVIVILCL 141
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 243 FAYGVVPVFENSWTYPPFSGHI 308
FA G+VP+F W+ PP G I
Sbjct: 99 FAIGLVPIFSFRWSLPPILGCI 120
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 243 FAYGVVPVFENSWTYPPFSGHI 308
FA G+VP+F W+ PP G I
Sbjct: 68 FAIGLVPIFSFRWSLPPILGCI 89
>SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)
Length = 786
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 383 KEIESRQVALKRTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMASS*RGFH 562
K++ +++V K +S DEE+GG G KF + F L L G R H
Sbjct: 120 KDMPNKEVIEKLYQGMSKSFDEELGGFGGAPKFPQPATFNFLFKYHLLKNGTEEGERALH 179
>SB_38512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 383 KEIESRQVALKRTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMASS*RGFH 562
K++ +++V K +S DEE+GG G KF + F L L G R H
Sbjct: 120 KDMPNKEVIEKLYQGMSKSFDEELGGFGGAPKFPQPATFNFLFKYHLLKNGTEEGERALH 179
>SB_22856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 340 EPLAKIFPSLSMCPLNGGYVQLFSKTGTTPYANSIILPADLVLFRSMSK 194
EPL + F + PL+ V+ FSK P++ ++ P L R +S+
Sbjct: 22 EPLVRPFSEPLIRPLSKPLVRPFSKPLVRPFSEPLVRPFSEPLMRQLSE 70
>SB_55055| Best HMM Match : rve (HMM E-Value=4.8e-05)
Length = 228
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 196 LTWTGKEPNLPAILLNSHMELCRFSKTVGHIHRL 297
LT++ +PN P L +H+ L R S + H H++
Sbjct: 174 LTYSSDDPNDPRPLTPNHLLLGRASVNIPHTHQI 207
>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 46 IANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPNL 225
+A FV + + S+ N D + + T+ +A ++VP+ + V T T P
Sbjct: 105 MAAFVGHHDVVSLINNFVSIDDLNYYTKPQGLEKVAKLESKLVPSLHLFV-TMTNLNPVK 163
Query: 226 PAILLNSHMELCRFSKTVGHI 288
+ LN+HMEL K V +
Sbjct: 164 LVLFLNNHMELVENYKAVNKV 184
>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
Length = 248
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 523 KRNQYESFKFIHFNKFLHA-IMXADFFVRNEGNMKSSF 413
+ + E + +HFNK LHA I D+ +R +K+ F
Sbjct: 20 QETEEERLERLHFNKVLHAFIYYRDYSMRKLARIKADF 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,022,100
Number of Sequences: 59808
Number of extensions: 407103
Number of successful extensions: 917
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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