Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0682.Seq
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41012-2|AAV28364.1| 411|Caenorhabditis elegans Hypothetical pr... 70 2e-12
U41012-1|AAA82294.3| 397|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical pr... 68 5e-12
Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical pr... 63 1e-10
Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 31 0.86
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 28 6.1
>U41012-2|AAV28364.1| 411|Caenorhabditis elegans Hypothetical
protein C06A6.4b protein.
Length = 411
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
VVP F WT+ P+S D DG IFARG+QDMKCVG+QY+EA+R
Sbjct: 77 VVPTFREYWTHDPYSAFKDEDGNIFARGAQDMKCVGVQYMEALR 120
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +1
Query: 46 IANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPNL 225
+ F EYL++ + QP DY C FL + A+E+G+ + E P V++T G +P+L
Sbjct: 7 VTRFREYLRVNTEQPKPDYEACRDFLFKYADELGIERRSVETAPGTYFVIMTIPGSKPDL 66
Query: 226 PAILLNSHMEL 258
P+I+L SH ++
Sbjct: 67 PSIMLYSHTDV 77
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 416 RTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMAS 544
RT+HI + PDEEIG +GM+ F EFK L + +G+A+
Sbjct: 132 RTIHIVWGPDEEIGHINGMKGFAVTEEFKKLNIDFALDEGIAT 174
>U41012-1|AAA82294.3| 397|Caenorhabditis elegans Hypothetical
protein C06A6.4a protein.
Length = 397
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
VVP F WT+ P+S D DG IFARG+QDMKCVG+QY+EA+R
Sbjct: 77 VVPTFREYWTHDPYSAFKDEDGNIFARGAQDMKCVGVQYMEALR 120
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +1
Query: 46 IANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPNL 225
+ F EYL++ + QP DY C FL + A+E+G+ + E P V++T G +P+L
Sbjct: 7 VTRFREYLRVNTEQPKPDYEACRDFLFKYADELGIERRSVETAPGTYFVIMTIPGSKPDL 66
Query: 226 PAILLNSHMEL 258
P+I+L SH ++
Sbjct: 67 PSIMLYSHTDV 77
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 416 RTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMAS 544
RT+HI + PDEEIG +GM+ F EFK L + +G+A+
Sbjct: 132 RTIHIVWGPDEEIGHINGMKGFAVTEEFKKLNIDFALDEGIAT 174
>Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical
protein C10C5.3 protein.
Length = 399
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/72 (40%), Positives = 48/72 (66%)
Frame = +1
Query: 43 SIANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPN 222
++ F EYL++ + QPN DY+ C FL + A+E+G+A + +E VP V++T G +P
Sbjct: 7 AVTRFREYLRVNTEQPNPDYAACRDFLFKYADELGIARRSFETVPGAIFVIMTIPGSQPE 66
Query: 223 LPAILLNSHMEL 258
LP+I+L SH ++
Sbjct: 67 LPSIMLYSHTDV 78
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
VVP F WT+ P+S D DG IFARG+QDMKCVG+Q +EA+R
Sbjct: 78 VVPTFREHWTHDPYSAFKDEDGNIFARGAQDMKCVGVQQMEALR 121
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +2
Query: 413 KRTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMAS 544
KRT+H+ + PDEEI G +GM+ F K +EFK L L +GM S
Sbjct: 132 KRTIHLVWGPDEEIFGINGMKGFAKTDEFKKLNLGFSLDEGMPS 175
>Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical
protein C10C5.5 protein.
Length = 397
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
VVP F WT+ P+S D DG IFARG+QDMKCVG+Q +EA+R
Sbjct: 78 VVPTFREHWTHDPYSAFKDEDGNIFARGAQDMKCVGVQQMEALR 121
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/72 (37%), Positives = 47/72 (65%)
Frame = +1
Query: 43 SIANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPN 222
++ F EYL++ + QPN +Y+ C FL + A+E+G+A + E P +V++T G +P
Sbjct: 7 AVTRFREYLRVNTEQPNPNYAACRDFLFKYADELGIARRSIETAPGVFLVIMTIPGSQPE 66
Query: 223 LPAILLNSHMEL 258
LP+I+L SH ++
Sbjct: 67 LPSIMLYSHTDV 78
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +2
Query: 413 KRTLHISFVPDEEIGGHDGMEKFVKMNEFKALILVSLWMKGMAS 544
KRT+H+ + PDEEI G +GM+ F K +EFK L L +GM S
Sbjct: 132 KRTIHLVWGPDEEIFGINGMKGFAKTDEFKKLNLGFSLDEGMPS 175
>Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical
protein C10C5.4 protein.
Length = 397
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +1
Query: 43 SIANFVEYLKIPSVQPNIDYSDCVKFLTRQANEIGLAVKIYEVVPTKPIVVLTWTGKEPN 222
++ F EYL++ + QPN DY C FL + A+E+G+ K E P V++T G +P
Sbjct: 7 AVTRFREYLRVNTEQPNPDYVACRDFLFKYADEVGIERKAVETAPGVYFVIMTIPGSQPE 66
Query: 223 LPAILLNSHMEL 258
LP+I+L SH ++
Sbjct: 67 LPSIMLYSHTDV 78
Score = 63.3 bits (147), Expect = 1e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +3
Query: 255 VVPVFENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
VVP F WT+ P+S D DG IFARG+QD KC+G+Q++EA R
Sbjct: 78 VVPTFREHWTHDPYSAFKDEDGNIFARGAQDTKCLGVQHVEAFR 121
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2
Query: 413 KRTLHISFVPDEEIGGHDGMEKFVKMNEFKAL 508
KRT+H+ + PDEE G +GM+ FV+ NEFK L
Sbjct: 132 KRTIHVVWGPDEETGHINGMKGFVETNEFKKL 163
>Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical
protein T24A11.3 protein.
Length = 414
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 607 NVRKFXXXSFXPLKPMKSSLGRCHSFHPKRNQYESFKFIHFNKFLHAIMXADFFV 443
NV + SF P + M + G P+R Y+ +H++ HA+ +DF +
Sbjct: 181 NVMEEATASFMPFRSMLQAFG-IRQVSPRRVPYDYGSLMHYHAVAHAVKVSDFTI 234
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 273 NSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
+ W PF ++ DGK+F RGS D K + + AIR
Sbjct: 109 DGWDTEPFE-LVEKDGKLFGRGSSDDKGPVLCWFHAIR 145
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 270 ENSWTYPPFSGHIDNDGKIFARGSQDMKCVGIQYLEAIR 386
E+ W PF + DGK+F RGS D K I ++ ++
Sbjct: 108 EDGWNTNPFE-LTEIDGKLFGRGSTDDKGPVIAWIAVLK 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,940
Number of Sequences: 27780
Number of extensions: 314360
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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