Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0682.Seq
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.6  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 609 PMYVSXPXTPXPR 571
           P+Y+S P  P PR
Sbjct: 102 PVYISQPRPPHPR 114



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 609 PMYVSXPXTPXPR 571
           P+Y+S P  P PR
Sbjct: 158 PVYISQPRPPHPR 170


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
 Frame = +1

Query: 28  YQNNPSIANFVEYLK-------IPSVQPNIDYSDCVKFLTRQ 132
           Y NN  I  F+ YLK         SV+ N  + + +KFL ++
Sbjct: 309 YPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQK 350


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 415 FQCNLAAFNFLIASKYWIPTHFMSWEPLA 329
           F+  L  ++F   S + I  HF   +PLA
Sbjct: 331 FRYGLLIYDFFKDSSFRIQHHFFYPDPLA 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,966
Number of Sequences: 438
Number of extensions: 3934
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)