Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0680.Seq
         (249 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2SRZ1 Cluster: Membrane protein, putative; n=3; Mycopl...    33   1.6  
UniRef50_UPI0000DB772C Cluster: PREDICTED: similar to CG8965-PA;...    31   6.5  
UniRef50_A7QIC9 Cluster: Chromosome undetermined scaffold_102, w...    30   8.5  

>UniRef50_Q2SRZ1 Cluster: Membrane protein, putative; n=3;
           Mycoplasma|Rep: Membrane protein, putative - Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC27343 / NCTC 10154)
          Length = 503

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -2

Query: 176 KP*CRKCYPLEEDHLFRFLRLPVPNGPSSWSINTSRPSTN*YKKLLRNSEGAQRI 12
           KP     Y +++D +  F+R     GP S+S++T +   + YKK++ + +   +I
Sbjct: 424 KPLQAGAYNIDQDMMISFIRTKKVQGPWSYSLDTQKRELSLYKKVITDRKMMSKI 478


>UniRef50_UPI0000DB772C Cluster: PREDICTED: similar to CG8965-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG8965-PA
           - Apis mellifera
          Length = 365

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 224 HPQSPLLTITTLHTIRKP*CRKCYPLEEDHLFRFLRLPVPNGPSSWSINTSR 69
           H    L  +T   T+R+P  R   PL+ED     L+   P G S +S+ T R
Sbjct: 98  HRDPRLFYLTMEVTVRRPNVRTVLPLDEDARPAVLQSCHPRGDSRFSLQTRR 149


>UniRef50_A7QIC9 Cluster: Chromosome undetermined scaffold_102,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_102, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 1187

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 111 CTEWPIFMV-N*HQPTIDELVQEVTSELGRCSTYFS 7
           C+EW I+++ +   P    L++++  ELG C  +FS
Sbjct: 663 CSEWNIYLLEDAAAPAYGHLLEKIALELGPCDLFFS 698


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,998,104
Number of Sequences: 1657284
Number of extensions: 3690622
Number of successful extensions: 8270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8265
length of database: 575,637,011
effective HSP length: 61
effective length of database: 474,542,687
effective search space used: 9965396427
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)