Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0680.Seq
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   2.6  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    23   5.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   7.8  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       23   7.8  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    23   7.8  

>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 248 RXYIGAXXHPQSPLLTITTLHT 183
           R Y+G   HPQ   L + +L T
Sbjct: 240 RAYLGTILHPQQAFLLLRSLRT 261


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 169 DAGSVTRWRRITYSDSSACLYRMAHLHGQLTP 74
           D  SV++ +R+    SS CL++       L+P
Sbjct: 477 DTRSVSKSKRLVRETSSGCLFKNHSKSNTLSP 508


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 148 WRRITYSDSSACL 110
           WR I YSD+  C+
Sbjct: 486 WRLIEYSDNQGCI 498


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 124 SSACLYRMAHLHGQLTPADHRR 59
           +S C +  +HL+ Q+TP    R
Sbjct: 420 TSTCAFENSHLNFQITPKSKTR 441


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 155 YPLEEDHLFRFLRLPVPNGPSSWSINTSRPS 63
           YP++   L   L  P+P+ PS+ S   + PS
Sbjct: 211 YPVDAHKLLEPLPTPIPSLPSTPSSYQNLPS 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 890,751
Number of Sequences: 5004
Number of extensions: 13574
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)