Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0680.Seq
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 27 2.1
01_06_0084 + 26286463-26288259 27 2.1
12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937 27 2.8
08_02_1024 - 23723560-23723693,23723835-23724041,23724183-237243... 26 3.7
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 26 3.7
10_01_0242 + 2534316-2535482 26 4.8
09_04_0470 + 17875119-17875239,17875327-17875496,17875637-178757... 26 4.8
07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379... 26 4.8
07_01_0318 + 2239382-2239452,2239573-2240218,2240321-2240386,224... 26 4.8
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151... 26 4.8
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 25 8.5
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 RQAEESE*VILLQRVTLPASWFADGVEG-GNSEQGRLGVXXSPNIXA 248
R+ E + V++ +R T+PA+WF G E G G P A
Sbjct: 25 RREEAAAEVVVSRRATIPAAWFHSSPAWLGFRETGAAGAAARPQYAA 71
>01_06_0084 + 26286463-26288259
Length = 598
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 149 LEEDHLFRFLRLPVPNGPSSWSINTSRPSTN 57
L D L FL LP P P++WS S S N
Sbjct: 70 LPGDSLCAFLDLPAPPSPAAWSSLISSFSQN 100
>12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937
Length = 418
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = -3
Query: 166 AGSVTRWRRITYSDSSACLYRMAHLH----GQLTPADHRRTSTRSYFGTRKVLNVF*RH 2
+G + RW+ Y+ + A L + H G+ P R R++ G +L+ RH
Sbjct: 204 SGMIDRWKATRYATAEASLLAIMRAHGARAGKPVPRAALREEARAHIGDTGLLDHLLRH 262
>08_02_1024 -
23723560-23723693,23723835-23724041,23724183-23724327,
23724440-23724615,23724713-23724851
Length = 266
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 66 IDELVQEVTSELGRCSTYFSDM 1
+D L + ELGR STYF+D+
Sbjct: 195 LDVLTPPYSEELGRPSTYFNDI 216
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 153 VTLPASWFADGVEGGNSEQGRLGV 224
V + AS DG GGN E+G LGV
Sbjct: 596 VQVNASTAVDGGGGGNPEKGALGV 619
>10_01_0242 + 2534316-2535482
Length = 388
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 239 IGAXXHPQSPLLTITTLHTIRKP*CRKCYPLEEDHLF 129
+GA + P + +T H +R+P R +EED LF
Sbjct: 290 LGAVLPLEVPSVPLTDSHLVRRPPVRILGLVEEDDLF 326
>09_04_0470 +
17875119-17875239,17875327-17875496,17875637-17875784,
17876491-17876697,17877550-17877656
Length = 250
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 66 IDELVQEVTSELGRCSTYFSDM 1
+D L +LGR STYFSD+
Sbjct: 188 LDVLAPPYAEDLGRPSTYFSDI 209
>07_01_0510 -
3794793-3795047,3796005-3796295,3796850-3796906,
3797021-3797055,3797132-3797172,3798020-3798519
Length = 392
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 176 KP*CRKCYPLEEDHLFRFLRLPVPNGPSSWSINTSRPSTN*YKKLLRNSE 27
KP C C E + R+P P S W I R N Y L R++E
Sbjct: 54 KPSCPFCQGRESECAPEIFRVPAPPDASPWRI---RVIENLYPALRRDAE 100
>07_01_0318 +
2239382-2239452,2239573-2240218,2240321-2240386,
2240507-2240572,2240681-2241069,2242296-2242401
Length = 447
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 165 ASWFADGVEGGNSEQGRLGVXXSPNI 242
++WFADG GG + LG+ +I
Sbjct: 66 SAWFADGGGGGGGDDDALGLGMGRDI 91
>01_01_0179 +
1517379-1517721,1518092-1518376,1519462-1519699,
1519796-1519946,1520049-1520446,1520552-1520573
Length = 478
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 176 CGWCGGW***AGETGG 223
CGWCG W +G GG
Sbjct: 5 CGWCGRWRRSSGGRGG 20
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = -2
Query: 113 PVPNGPSSWS-INTSR 69
PVPNG S WS +N SR
Sbjct: 784 PVPNGSSHWSGLNISR 799
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,654,661
Number of Sequences: 37544
Number of extensions: 113779
Number of successful extensions: 301
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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