Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0680.Seq
         (249 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)                 33   0.047
SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)                       29   0.76 
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   1.3  
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)            27   2.3  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_49421| Best HMM Match : 7tm_1 (HMM E-Value=3e-07)                   25   7.1  

>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
          Length = 503

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 197 TTLHTIRKP*CRKCYPLEEDHLFRFLRLPVPNGPSSWSINT 75
           TT  ++ +P C + + +E   L R LR PVP  P  W + +
Sbjct: 20  TTSISLHEPKCLEKWRMENSQLPRHLRRPVPQRPQGWQMGS 60


>SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)
          Length = 298

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 86  TMKMGHSVQAXXXXXXXDPPPTGNTSGIMVCGWC 187
           T+ +G  + A        P P  NTS +++CG C
Sbjct: 83  TLSIGDLIAAMKNKPDKKPEPLKNTSDVVICGIC 116


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 109  YRMAHLHGQL-TPADHRRTSTRS 44
            YR+   H  + TP DHRR+STRS
Sbjct: 966  YRIERSHESVHTPNDHRRSSTRS 988


>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
          Length = 167

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 212 PLLTITTLHTIRKP*CRKCYPLEEDHLFRFLRLPVPNGPSSWSINTSR 69
           P+    T HT+  P C   + L   H   +  LP+ +  +S+++  SR
Sbjct: 58  PISFCATYHTLTIPHCATYHTLPISHCATYHTLPISHCSTSYTLPISR 105


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 96   WAIRYRQAEESE*VILLQRVTLPASW-FADGVEG 194
            W +     +E + ++  QR   P SW + D VEG
Sbjct: 1114 WDVNVEMYKEGQRILERQRFAFPPSWLYVDNVEG 1147


>SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 121 SACLYRMAHLHGQLTPADHRRTSTRSY 41
           S  L  +  L+  L P  HR+T TRSY
Sbjct: 257 SLVLVSLERLYVTLYPLQHRKTRTRSY 283


>SB_49421| Best HMM Match : 7tm_1 (HMM E-Value=3e-07)
          Length = 265

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 166 AGSVTRWRRITYSDSSACLYRMAHLHGQLTPADHRRTSTRSYF 38
           AG V      T S +   L  +  LH  + P  HR+   R+YF
Sbjct: 84  AGDVLWIACSTASINGLVLIAIERLHATVRPLRHRQVQPRAYF 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,970,986
Number of Sequences: 59808
Number of extensions: 111136
Number of successful extensions: 230
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)