Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0680.Seq
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    27   1.3  
Z81487-3|CAB03997.2|  345|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    25   9.4  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    25   9.4  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    25   9.4  
AF067940-3|AAC19207.1|  272|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 148 WRRITYSDSSACLYRMAHLHG 86
           WR I+YS SS C +R+   +G
Sbjct: 438 WRNISYSGSSDCYWRIVSANG 458


>Z81487-3|CAB03997.2|  345|Caenorhabditis elegans Hypothetical
           protein C54E10.4 protein.
          Length = 345

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 143 EDHLFRFLRLPVPN 102
           ++ +FR LRLPVPN
Sbjct: 307 KEKVFRLLRLPVPN 320


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 166  AGSVTRWRRITYS 128
            AG +T W+R+TY+
Sbjct: 1348 AGGITEWKRLTYT 1360


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 166  AGSVTRWRRITYS 128
            AG +T W+R+TY+
Sbjct: 1326 AGGITEWKRLTYT 1338


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 166  AGSVTRWRRITYS 128
            AG +T W+R+TY+
Sbjct: 1348 AGGITEWKRLTYT 1360


>AF067940-3|AAC19207.1|  272|Caenorhabditis elegans Hypothetical
           protein F36F12.8 protein.
          Length = 272

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 160 SVTRWRRITYSDSSACLYRMAHLHGQLTPADHRR 59
           S+ R R++ +SD   C+     L+ + T  DH R
Sbjct: 54  SLNRHRKLVHSDEYTCMLCARKLYLKETVRDHMR 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,049,038
Number of Sequences: 27780
Number of extensions: 80383
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)