Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0680.Seq
         (249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.25 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   0.76 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   0.76 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   4.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   5.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   5.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   9.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   9.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 0.25
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 119 RLPVPNGPSSWSINTSRPSTN*YKKLLR 36
           +L +PN    WS   S P  + Y  LLR
Sbjct: 360 KLMLPNCCGKWSSQKSEPRRSIYSSLLR 387


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 0.76
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 167 CRKCYPLEEDHLFRFLRLPVPNGPSSWS 84
           C+KC  +++ +L +       N P  W+
Sbjct: 75  CKKCTEIQKQNLDKLAEWFTTNEPEKWN 102


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 0.76
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 167 CRKCYPLEEDHLFRFLRLPVPNGPSSWS 84
           C+KC  +++ +L +       N P  W+
Sbjct: 75  CKKCTEIQKQNLDKLAEWFTTNEPEKWN 102


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 47  KLLRNSEGAQRI 12
           KLLRNS G +R+
Sbjct: 108 KLLRNSMGKRRV 119


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 172 HDAGSVTRWRRITYSDS 122
           H +GS+TR  R+T + S
Sbjct: 121 HHSGSITRSIRLTITAS 137


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 172 HDAGSVTRWRRITYSDS 122
           H +GS+TR  R+T + S
Sbjct: 121 HHSGSITRSIRLTITAS 137


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 172 HDAGSVTRWRRITYSDS 122
           H +GS+TR  R+T + S
Sbjct: 60  HHSGSITRSIRLTITAS 76


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 QRVTLPASWFADGVEGGNSEQG 212
           + +TL   + ADG++  N E G
Sbjct: 102 RHITLHHCYDADGIKLMNEENG 123


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 QRVTLPASWFADGVEGGNSEQG 212
           + +TL   + ADG++  N E G
Sbjct: 102 RHITLHHCYDADGIKLMNEENG 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,172
Number of Sequences: 438
Number of extensions: 1096
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)