Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0680.Seq
         (249 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18840.1 68414.m02346 calmodulin-binding family protein low s...    28   0.99 
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   2.3  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    26   3.0  
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER...    25   9.2  
At1g09400.1 68414.m01051 12-oxophytodienoate reductase, putative...    25   9.2  

>At1g18840.1 68414.m02346 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 572

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 160 SVTRWRRITYSDSSACLYRMAHLHGQLTPADHRRTS---TRSYFGTRKV 23
           ++ R R I +SD    + R  HLH Q  P +++  S   T SY G  K+
Sbjct: 165 ALARGREIRHSDIGVEVQRKCHLHHQ--PLENKANSVVDTHSYLGINKL 211


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 108  TEWPIFMVN*HQ-PTIDELVQEVTSELGRCSTYFS 7
            ++W ++++     P    L++++ SELG C  +FS
Sbjct: 1808 SDWNLYLIEEVVVPAYGHLLEKIASELGPCDLFFS 1842


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 172  HDAGSVTRWRRITYSDSSACLYRM 101
            H +G++  WR +  +D   C YRM
Sbjct: 3433 HQSGALKVWRMVHCTDPIKCCYRM 3456


>At2g17190.1 68415.m01985 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 538

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 155 YPLEEDHLFRFLRLPVPNGPSSWSINTSRPST 60
           Y L+ DH    +R  VP+ PS+ + N    +T
Sbjct: 76  YGLQADHTVHMVRGFVPSSPSAPAANAGNQTT 107


>At1g09400.1 68414.m01051 12-oxophytodienoate reductase, putative
           similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
          Length = 324

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 93  RWAIRYRQAEESE*VILLQRVTLPASWFADGVEGGNSEQGRLGVXXSPNI 242
           R+A++  +A   E  I   RV +  S FAD +E G+++  RLG+  + ++
Sbjct: 191 RFALQVIEAVSKE--IGPDRVGIRLSPFADYMESGDTDPKRLGLYMAKSL 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,920,070
Number of Sequences: 28952
Number of extensions: 79127
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)