Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SVT2 Cluster: Chromosome undetermined SCAF13726, whol...    34   1.5  
UniRef50_Q22D56 Cluster: Insect antifreeze protein; n=2; Alveola...    33   4.7  
UniRef50_UPI00015C47AA Cluster: hypothetical protein SGO_1307; n...    32   6.2  
UniRef50_Q4SNU2 Cluster: Chromosome 15 SCAF14542, whole genome s...    32   6.2  
UniRef50_Q8IAL7 Cluster: Putative uncharacterized protein MAL8P1...    32   6.2  
UniRef50_UPI0000E47066 Cluster: PREDICTED: similar to AP1 endonu...    32   8.2  

>UniRef50_Q4SVT2 Cluster: Chromosome undetermined SCAF13726, whole
           genome shotgun sequence; n=2; Clupeocephala|Rep:
           Chromosome undetermined SCAF13726, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 415

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 209 VDPCVFFYKFHFYRVYLHTHTFFFFIICKLRIFL 310
           V PC+   KFH  R Y+H + FF FI+    +F+
Sbjct: 137 VTPCLLCRKFHCTRNYIHINLFFSFILRASAVFI 170


>UniRef50_Q22D56 Cluster: Insect antifreeze protein; n=2;
            Alveolata|Rep: Insect antifreeze protein - Tetrahymena
            thermophila SB210
          Length = 4016

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 446  CSGGMFMDIVVCFDDNTR-SIRTGCKCINECS*SERRRYFTRTSPMLKICGACI 288
            C G    + ++C+  N   SI+    CI EC  S+ +   + T+P  K C  CI
Sbjct: 1988 CFGPSQSNCIICYQPNQYISIKQNNICIPECDISQAQFIDSTTNPSQKYCRQCI 2041


>UniRef50_UPI00015C47AA Cluster: hypothetical protein SGO_1307; n=1;
           Streptococcus gordonii str. Challis substr. CH1|Rep:
           hypothetical protein SGO_1307 - Streptococcus gordonii
           str. Challis substr. CH1
          Length = 244

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = -2

Query: 159 YVQRHLLITN*CLYGLIFSFRFISFHRV*NHKSKEVSLQKLKKV 28
           YVQ HLLIT+  LYG+I +   I+ HR+      +V  Q LKK+
Sbjct: 97  YVQNHLLITS-SLYGVIPALAPIAPHRLDFMTKLKVEKQSLKKL 139


>UniRef50_Q4SNU2 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 15 SCAF14542, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 454

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 194 LHCGVVDPCVFFYKFHFYRVYLHTHTFFFFIICKLRIFL 310
           L  GV+  CVF  K H  R Y+H H F  FI+  + +F+
Sbjct: 167 LTVGVIILCVF-RKLHCTRNYIHIHLFVAFILKAVTVFI 204


>UniRef50_Q8IAL7 Cluster: Putative uncharacterized protein
           MAL8P1.155; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL8P1.155 - Plasmodium
           falciparum (isolate 3D7)
          Length = 183

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 194 LHCGVVDPCVFFYKFHFYRVYLHTHTFFFFIICKLRIFLTLAKSV*NIFFAHF 352
           +H  + +P  FF+   FY   ++   FFFF+I    IFL L K   + F + F
Sbjct: 122 MHMCIYEPFSFFFPSPFY---INGQFFFFFLIIFFSIFLFLLKMGLSFFLSFF 171


>UniRef50_UPI0000E47066 Cluster: PREDICTED: similar to AP1
           endonuclease; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to AP1 endonuclease -
           Strongylocentrotus purpuratus
          Length = 377

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 349 LQEHSLIHLQPVRIDRVLSSKQTTISIN 432
           +QEH ++H +P+R ++VLS+   T S N
Sbjct: 29  VQEHRIVHNEPIRYEKVLSNMLITSSAN 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,603,699
Number of Sequences: 1657284
Number of extensions: 7792729
Number of successful extensions: 21023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20926
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)