Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   3.6  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   8.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.4  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 179 GEAAPLHCGVVDPCVFFYKFHFYRVYLHT 265
           GE AP HCG+++  +    FH  ++ L T
Sbjct: 282 GETAPKHCGILN--ITGKDFHLEKIRLRT 308


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 415 FVLMIIRDLYVLAANVLMNAPEVSEED 335
           F  ++   L++ AA +L++ P++ EE+
Sbjct: 326 FSFVVQHCLHITAAQILLHIPDIQEEE 352


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 363 INTFAASTYRSRIIIKTNDYIHKHSS----TTIRQYLPXT 470
           +N+++   Y  +I   T+ Y          TTIRQ+LP T
Sbjct: 386 LNSYSLHVYPQKITAPTSPYAATQEELLAFTTIRQHLPDT 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,217
Number of Sequences: 5004
Number of extensions: 35440
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)