Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0562 - 11520463-11520479,11520605-11520731,11521047-11521247     29   1.6  
07_01_0576 + 4280671-4280730,4280812-4280865,4280955-4281017,428...    29   2.7  
05_04_0404 - 21000267-21001562                                         28   3.6  
02_02_0022 - 6162575-6162618,6162901-6163057                           28   4.8  

>02_02_0562 - 11520463-11520479,11520605-11520731,11521047-11521247
          Length = 114

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 355 EHSLIHLQPVRIDRVLSSKQTTISINIPPLQ 447
           EHS +HL    ID VLS   T + ++ PP Q
Sbjct: 60  EHSRLHLHVYCIDSVLSVHPTILILDSPPAQ 90


>07_01_0576 +
           4280671-4280730,4280812-4280865,4280955-4281017,
           4281100-4281149,4281255-4281330,4281663-4281863,
           4282414-4282501,4282606-4282691,4282773-4282859,
           4283289-4283333,4283547-4283567
          Length = 276

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 496 RYPVNLPDVVXGRYCLIVVEECLWI 422
           RYP  LP +    +C I+   C+W+
Sbjct: 76  RYPYLLPSLCISVFCFIIFISCMWL 100


>05_04_0404 - 21000267-21001562
          Length = 431

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 217 LRFFL*VSLLPCVLAHTHIL 276
           L+ FL VS++PCVL + H+L
Sbjct: 238 LQSFLGVSIIPCVLLYEHVL 257


>02_02_0022 - 6162575-6162618,6162901-6163057
          Length = 66

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 212 DPCVFFYKFHFYR 250
           DPC+FFY++  YR
Sbjct: 51  DPCIFFYEYSIYR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,807
Number of Sequences: 37544
Number of extensions: 211134
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)