Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)                   30   0.92 
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)                   30   0.92 
SB_30154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    27   8.6  

>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
          Length = 809

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +2

Query: 143 RCRCT*IQAVPKGEAAPLH----CGVVDPCV 223
           RCRC   + +P+G   P H    CG   PC+
Sbjct: 414 RCRCCRFEGLPRGPEDPAHVVVYCGTCRPCI 444


>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
          Length = 983

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +2

Query: 143 RCRCT*IQAVPKGEAAPLH----CGVVDPCV 223
           RCRC   + +P+G   P H    CG   PC+
Sbjct: 588 RCRCCRFEGLPRGPEDPAHVVVYCGTCRPCI 618


>SB_30154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 221 RKGQPLRSAMEQPHP 177
           R+GQP RSAM  PHP
Sbjct: 55  RRGQPNRSAMRGPHP 69


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 415 TTISINIPPLQSGNIYHXQHQ 477
           T I+INI PL     YH  HQ
Sbjct: 508 TIITINISPLSPSTYYHHHHQ 528


>SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 208 HSAVQWSSLTLGNRLNLRAATSVDNKLVSLWT 113
           H   +W  L  G+ L+L   +  D  +V LWT
Sbjct: 43  HDYTEWRRLRCGHPLDLNGKSGEDYDVVILWT 74


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = +1

Query: 385 RIDRVLSSKQTTISINIPPLQSGNIYHXQHQV 480
           ++ +++ SK+T +++++   +SGNI +  +QV
Sbjct: 236 KVFKIMHSKETNLAVSVDLTKSGNILNLVNQV 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,284
Number of Sequences: 59808
Number of extensions: 273498
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)