Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-3|CAA84333.1|  354|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AY551963-1|AAS65427.1|  458|Caenorhabditis elegans histone acety...    27   10.0 
AF106581-4|AAC78211.1|  458|Caenorhabditis elegans Myst family h...    27   10.0 

>Z34802-3|CAA84333.1|  354|Caenorhabditis elegans Hypothetical
           protein M88.3 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 355 EHSLIHLQ---PVRIDRVLSSKQTTISINIPPLQSGNIYHXQ 471
           +H+++ L+     +++RV++S        +PP QSG +YH +
Sbjct: 262 QHNVVELEVQSTTKVNRVITSLLREYFQTLPPDQSGVLYHVE 303


>AY551963-1|AAS65427.1|  458|Caenorhabditis elegans histone
           acetyltransferase protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 259 QVHTVEVKLIKKNARVNHSAVQWSSLTLGNR 167
           QV+   ++  KK  R+N +A+QW     G +
Sbjct: 422 QVYEKRIEAAKKKTRINPAALQWRPKEYGKK 452


>AF106581-4|AAC78211.1|  458|Caenorhabditis elegans Myst family
           histone acetyltransferase-like protein 1 protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 259 QVHTVEVKLIKKNARVNHSAVQWSSLTLGNR 167
           QV+   ++  KK  R+N +A+QW     G +
Sbjct: 422 QVYEKRIEAAKKKTRINPAALQWRPKEYGKK 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,467,095
Number of Sequences: 27780
Number of extensions: 207093
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)