Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.77 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 357 AFINTFAASTYRSRIII-KTNDYIHKHSSTTIRQYLPXTTS 476
           A I  F  S  R    +  T  Y  KH++    QY+P ++S
Sbjct: 364 AVIRNFNESENRRNSCLGSTETYYSKHNTQQFTQYIPESSS 404


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 403 SSKQTTISINIPP 441
           +S  TT+++N+PP
Sbjct: 667 ASHSTTLTVNVPP 679


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 161 IQAVPKGEAAPLHCGVVDPCVFFYKFHFYRVYLH 262
           + +V  G    LH    DPCV +Y      +YLH
Sbjct: 702 LHSVVSGALDRLHYET-DPCVRYYPRRKEWLYLH 734


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 161 IQAVPKGEAAPLHCGVVDP 217
           I+ +P     P+HCG   P
Sbjct: 339 IEQIPVPVPVPIHCGNFPP 357


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 170 VPKGEAAPLHCGV 208
           V KG+ A LHC V
Sbjct: 819 VKKGDTATLHCEV 831


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 170 VPKGEAAPLHCGV 208
           V KG+ A LHC V
Sbjct: 815 VKKGDTATLHCEV 827


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 362 ECS*SERRRYFTRTSP 315
           E S  +R  YFTRT P
Sbjct: 247 ELSNKQRFEYFTRTIP 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,705
Number of Sequences: 438
Number of extensions: 2316
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)