Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0679.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21060.1 68416.m02662 transducin family protein / WD-40 repea...    28   4.0  
At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate synth...    27   7.0  
At5g44690.1 68418.m05476 hypothetical protein                          27   9.3  
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    27   9.3  

>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Retinoblastoma-binding protein 5 (RBBP-5)
           [Homo sapiens](RBQ-3)
          Length = 547

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -1

Query: 355 PEVSEEDISHGLRQCXXXXXXXXXXXXECV---CVQVHTVEVKLIKKNARVNHSAVQWSS 185
           PEV EE + HG+ +C             C    CV +   E + I K  R N  +   +S
Sbjct: 14  PEVIEEYLEHGVIKCVAFNHRGSLLAAGCADGGCV-IWDFETRGIAKEIRDNDCSAAITS 72

Query: 184 LTLGNRLNLRAATSVDNKLVSLW 116
           ++  ++   R   S  +K ++LW
Sbjct: 73  VS-WSKYGHRLLVSAADKSLTLW 94


>At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           GI:1173638 [GB:U35779] from [Triticum aestivum] (Plant
           Mol. Biol. 31 (5), 1009-1020 (1996)), GI:1813331 from
           Vigna radiata
          Length = 557

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 IQAVPKGEAAPLHCGVVDPCVFFYKFHFY 247
           +Q V +G    L  G V PC FFY   FY
Sbjct: 37  LQGVVQGRGG-LFLGSVIPCAFFYFLQFY 64


>At5g44690.1 68418.m05476 hypothetical protein
          Length = 684

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 275 RMCVCASTHGRSETYKKKRKGQPLRSAMEQPHPWEPLEFTCSD 147
           R  +   T GR+E  +KK +G+ +     + +P E     C D
Sbjct: 359 RRVIDVKTEGRNEERRKKEEGKSMEIEEYRSNPQEVTSVVCLD 401


>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 70   ISNSMKRNETKRKNKSIETLVCYQQMSLHVNSSGS 174
            +  ++K+NE     + I+T VCY  +++  N  G+
Sbjct: 1170 LQEALKKNERLLGPEHIQTAVCYHALAIAFNCMGA 1204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,612,619
Number of Sequences: 28952
Number of extensions: 180495
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)