Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0678.Seq
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   2.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -3

Query: 318 LPDRRQKRLIFSTITTKMNLSVKWIWKSSWLDRTACPAPTSTPS 187
           LP  + ++L  + + +  N  ++   + +W      P+PTS+ S
Sbjct: 80  LPALKSRKLNNNNVVSSTNQEIRGPKRKTWKVEEDSPSPTSSVS 123


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 243  WKSSWLDRTACPAPTSTPSVRRPACT 166
            W ++   RT    PT+T +  RP  T
Sbjct: 1052 WTTTTTRRTTTTRPTTTSTTTRPTTT 1077


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 243 WKSSWLDRTACPA 205
           W S WL+R A PA
Sbjct: 86  WVSFWLNRNATPA 98


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 324 TQFSCRDGQVLATQ 365
           T+F+CR G V  TQ
Sbjct: 500 TEFACRPGTVFHTQ 513


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 492  VKSFSRMASISSMKMIAGLSLWQDG 566
            V S  +   +SS  +   LS W DG
Sbjct: 1493 VPSAEKFIEVSSNSITLHLSAWSDG 1517


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,779
Number of Sequences: 336
Number of extensions: 2904
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)