Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0678.Seq
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 133 2e-32
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 99 4e-22
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 97 2e-21
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 94 1e-20
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 92 5e-20
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 87 2e-18
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 67 2e-12
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 64 1e-11
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 63 3e-11
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 62 8e-11
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 62 8e-11
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 60 2e-10
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 59 4e-10
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 59 4e-10
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 51 1e-07
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 47 2e-06
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 43 3e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 38 8e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 31 0.17
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 1.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 3.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 3.6
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 3.6
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 8.3
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 8.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 8.3
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 133 bits (321), Expect = 2e-32
Identities = 74/113 (65%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Frame = -3
Query: 588 PRMVRXVFRLAKEIAQQSFSLMKLMPFY*K-I*RPNWCRREVQRILLELLNQMDGFDQTT 412
PRMVR VFR+A+E A + ++ K REVQRIL+ELL QMDGFDQ
Sbjct: 213 PRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGA 272
Query: 411 NVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLIFSTITTKMNLS 256
NVKVIMATNRADTLDPALLRPGRLDRKIEFP DRRQ+RL+F TIT KM LS
Sbjct: 273 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLS 325
Score = 62.9 bits (146), Expect = 3e-11
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIK-KDESEYE 77
EVDL+ F+ RPD SGA I AI Q+AG+ AVR++R ++L D E+ Y +K D ++
Sbjct: 327 EVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFA 386
Query: 76 FYK 68
FYK
Sbjct: 387 FYK 389
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 99.1 bits (236), Expect = 4e-22
Identities = 55/112 (49%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
Frame = -3
Query: 588 PRMVRXVFRLAKEIAQQSFSLMKLMPFY*K-I*RPNWCRREVQRILLELLNQMDGFDQTT 412
PR+VR +F A+E + + ++ K + RE+QR +LELLNQ+DGFD +
Sbjct: 270 PRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQ 329
Query: 411 -NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNL 259
++KVIMATNR LDPAL+RPGR+DRKI F PD KR IF+ T+KMNL
Sbjct: 330 RDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNL 381
Score = 46.0 bits (104), Expect = 4e-06
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIK-KDE 89
+V+LEE + D +SGA+I AI EAG+ A+RE R V+ DF + + +K KDE
Sbjct: 384 DVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDE 439
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 97.1 bits (231), Expect = 2e-21
Identities = 46/72 (63%), Positives = 54/72 (75%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
EVQR +LELLNQ+DGF+ T N+KVIMATNR D LDPALLRPGR+DRKIEFP P +
Sbjct: 265 EVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAE 324
Query: 291 IFSTITTKMNLS 256
I + MNL+
Sbjct: 325 ILRIHSRSMNLT 336
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -2
Query: 250 VDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDES 86
+DL+ + + SGA++ +C EAGM A+RE R V +DFE + K +S
Sbjct: 339 IDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDS 393
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + +P+IIF+DEID+I
Sbjct: 231 FVMAREHAPSIIFMDEIDSI 250
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 94.3 bits (224), Expect = 1e-20
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
RE+QR L+ELLNQMDGFD K+IMATNR DTLDPALLRPGRLDRKIE PLP+
Sbjct: 250 REIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPN 304
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -2
Query: 256 GEVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKN--NIKKDESE 83
GE+D E V D +GAD+ + EAG A++E+R V+ D + ++KK E
Sbjct: 323 GEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGT 382
Query: 82 YEFYK 68
++ K
Sbjct: 383 IDYQK 387
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + P +IF+DEIDAI
Sbjct: 218 FGYAKEHEPCVIFMDEIDAI 237
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 92.3 bits (219), Expect = 5e-20
Identities = 46/79 (58%), Positives = 54/79 (68%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
REVQR +LELLNQ+DGF VKVI ATNR DTLDPALLR GRLDRK+EFPLP+ +
Sbjct: 303 REVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARV 362
Query: 294 LIFSTITTKMNLSVKWIWK 238
I + KM + W+
Sbjct: 363 GILRIHSRKMAIDDDINWE 381
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
+++ EE D +GA + ++C EAGM A+R+
Sbjct: 377 DINWEELARSTDEYNGAMLKSVCVEAGMIALRQ 409
Score = 29.5 bits (63), Expect = 0.38
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + SPAIIFIDE+DAI
Sbjct: 271 FALAKEKSPAIIFIDELDAI 290
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 87.0 bits (206), Expect = 2e-18
Identities = 47/105 (44%), Positives = 62/105 (59%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
EVQR +LEL+ Q+DGFD N+KV+ ATNR +TLD AL+RPGR+DRK+EF LPD +
Sbjct: 298 EVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAH 357
Query: 291 IFSTITTKMNLSVKWIWKSSWLDRTACPAPTSTPSVRRPACTLSG 157
I M + W+ L CP+ T + R CT +G
Sbjct: 358 ILRIHAKSMAIDKDIRWE---LIARLCPSQTG--AELRSVCTEAG 397
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -2
Query: 238 EFVAR--PDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDE 89
E +AR P + +GA++ ++C EAGM A+R R + KDF + +K ++
Sbjct: 375 ELIARLCPSQ-TGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKGNQ 425
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 66.9 bits (156), Expect = 2e-12
Identities = 32/61 (52%), Positives = 41/61 (67%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R++ +LL +MDG + NV VI ATNR D +DPAL+RPGRLD+ I PLPD + I
Sbjct: 618 RVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQ 677
Query: 282 T 280
T
Sbjct: 678 T 678
Score = 56.8 bits (131), Expect = 2e-09
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
+R++ +LL MDG +NV V+ ATNR +++DPAL R GR DR+++ +PD + I
Sbjct: 342 RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEIL 401
Query: 285 STITTKMNLS 256
T M L+
Sbjct: 402 RIHTKNMKLA 411
Score = 32.7 bits (71), Expect = 0.041
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
+VDLE+ A G+D+ ++C EA M +RE
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIRE 445
Score = 32.3 bits (70), Expect = 0.054
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAILLK 500
F +++SPAIIFIDEID+I K
Sbjct: 310 FEEAEKNSPAIIFIDEIDSIAPK 332
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 295 FNLLDNHYQDEPFGE-VDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEK 119
F++L + P E VDL SGAD+ + Q A A++++ + ++ E
Sbjct: 673 FSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENET 732
Query: 118 G 116
G
Sbjct: 733 G 733
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 64.1 bits (149), Expect = 1e-11
Identities = 30/68 (44%), Positives = 43/68 (63%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R++ LL ++DG + V VI ATNR D +DPA+LRPGRLD+ + LPD ++ I
Sbjct: 611 RVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILK 670
Query: 282 TITTKMNL 259
T+T + L
Sbjct: 671 TLTKQTPL 678
Score = 49.6 bits (113), Expect = 3e-07
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = -3
Query: 585 RMVRXVFRLAKEIAQQSFSLMKLMPFY*KI*RPNWCRREVQRILLELLNQMD--GFDQTT 412
+ VR VF AK +A + ++ K R + R +RI+ + L MD F++T
Sbjct: 254 KKVREVFEEAKSLAPCLMFIDEIDAVTPK--RESAQREMERRIVAQFLTCMDELSFEKTD 311
Query: 411 N--VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
V VI ATNR D+LD AL R GR DR+I +P + + I T+ + LS
Sbjct: 312 GKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLS 365
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 62.9 bits (146), Expect = 3e-11
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 280
I+ LL MDG + V +I ATNR D +DPAL RPGR DR+ FPLPDR ++ I
Sbjct: 391 IVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEI 450
Query: 279 ITTKMNLSV-KWI 244
T + V +W+
Sbjct: 451 HTRNWDPPVPEWL 463
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 61.7 bits (143), Expect = 8e-11
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
+++ +LL +MDG DQ N+ VI TNR D +D ALLRPGRL+ +E LPD + I
Sbjct: 400 QVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILK 459
Query: 282 TITTKM 265
T++M
Sbjct: 460 IHTSRM 465
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 61.7 bits (143), Expect = 8e-11
Identities = 29/69 (42%), Positives = 42/69 (60%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R++ LLN++DG + NV V+ ATNR D +DPAL+RPGRLDR + P+ ++ I
Sbjct: 665 RVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVK 724
Query: 282 TITTKMNLS 256
KM +
Sbjct: 725 IQAEKMKFA 733
Score = 52.8 bits (121), Expect = 4e-08
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK----R 295
R + LL +DG V VI ATNR +++D AL RPGRL+++IE +PD+ + +
Sbjct: 398 RAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIK 457
Query: 294 LIFSTITTKMN 262
L+ S + ++N
Sbjct: 458 LLLSGVPNEIN 468
Score = 34.3 bits (75), Expect = 0.013
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVREN 152
+VDL+ + + SGA++ A+CQEAG+ A+ E+
Sbjct: 735 DVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHED 768
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAILLK 500
F + P+IIFIDEIDA+ K
Sbjct: 365 FEDARAHQPSIIFIDEIDALAPK 387
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F ++ SP++IF DEIDA+
Sbjct: 634 FQKARQASPSVIFFDEIDAL 653
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E + L +LL +MDGF + ++ V TNR D LDPALLRPGR DR+I PD +
Sbjct: 415 ERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQ 474
Query: 291 IF 286
IF
Sbjct: 475 IF 476
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + ++++P IIFIDEIDAI
Sbjct: 381 FATARKNAPCIIFIDEIDAI 400
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 59.3 bits (137), Expect = 4e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI 289
I+ LL MDG D V VI ATNR + LDPAL RPGR DR+ FPLP+++ + I
Sbjct: 497 IVSTLLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKI 553
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 208 GADINAICQEAGMHAVR 158
GAD+ A+C EA ++AVR
Sbjct: 582 GADLKALCTEAALNAVR 598
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F +R P+IIF DEID +
Sbjct: 463 FEEARRVQPSIIFFDEIDGL 482
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 59.3 bits (137), Expect = 4e-10
Identities = 25/68 (36%), Positives = 42/68 (61%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R++ ++L QMDG + V ++ AT R D +DPALLRPGRLD+ I LP+ ++ +
Sbjct: 725 RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
Query: 282 TITTKMNL 259
+ + ++
Sbjct: 785 KLANRFHI 792
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 51.2 bits (117), Expect = 1e-07
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = -3
Query: 468 VQRILLELLNQMDGFDQTTN----VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 301
+++ L +LL +DGF + + V I ATN ++LDPAL RPGR DR I PLPD R
Sbjct: 383 MRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRG 442
Query: 300 KRLI 289
+ I
Sbjct: 443 RLAI 446
Score = 29.5 bits (63), Expect = 0.38
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + ++ +P+IIFIDE+DAI
Sbjct: 352 FAAARKQAPSIIFIDELDAI 371
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = -3
Query: 468 VQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKI 328
+ R++ +LL ++D + N V VI ATNR D LDP+LLRPGR D+ +
Sbjct: 773 MDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLV 821
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + SP +IF DE+D+I
Sbjct: 740 FEKARNSSPCVIFFDELDSI 759
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
LLN +DG + + M TN + LDPAL+RPGR+D K Q R +F+
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFT 381
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 38.3 bits (85), Expect = 8e-04
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = -3
Query: 585 RMVRXVFRLAKEIAQQSFSLMKLMPFY*KI*RPNWCRREVQRILLELLNQMDGF-DQTTN 409
++V +F LA+++ + ++ F + R + +I E ++ DG +
Sbjct: 171 KLVDALFTLARKLEPTIIFIDEIDTFLRQ--RQRTDHEAMAQIKAEFMSMWDGLLSGQSR 228
Query: 408 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSVKWIW 241
V V+ ATNR +D A+ R R+ + PLP+ Q+R I K+ L + W
Sbjct: 229 VLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDW 282
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAIL 506
F ++ P IIFIDEID L
Sbjct: 177 FTLARKLEPTIIFIDEIDTFL 197
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 277 HYQDEPFGEVDLEEFVARPDRVSGADINAICQEAGMHAVR 158
H Q E DLEE V + SG+DI A+ ++A M +R
Sbjct: 569 HNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAIL 506
F +R + ++IF+DEID+IL
Sbjct: 464 FEVAKRQTCSVIFVDEIDSIL 484
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAIL 506
F ++ SP+IIF+DEID++L
Sbjct: 544 FTLAKKLSPSIIFVDEIDSLL 564
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 274 YQDEPFGEVDLEEFVARPDRVSGADINAICQEAGMHAVR 158
YQ D+E V + SG+D+ A+ ++A M +R
Sbjct: 650 YQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGPLR 688
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + P+IIFIDEID++
Sbjct: 214 FEMAREQKPSIIFIDEIDSL 233
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 305 RLSGRGNSIFLSRRPGLSNAGSNVSARFVAIITLT 409
+L+ I +RPG S+ G+ + +FV +T+T
Sbjct: 446 KLTASKEQIASPKRPGPSDNGNEIPTKFVQKVTIT 480
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 84 NMNFINKRHFSVDCVLICLQLE 19
N++F+N+ SVD V+IC+ ++
Sbjct: 552 NLSFVNETTVSVDKVVICIPMD 573
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -2
Query: 259 FGEVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNI 101
F +VDL + A + +I+A+ AG+ AV E+ + +P + YKNNI
Sbjct: 60 FHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGES--VQVPLSY---YKNNI 107
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADIN 194
E+DLE F +P R GADI+
Sbjct: 120 EIDLESFDDKPWRKPGADIS 139
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 217 RVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKK 95
RVSG G V +PKD+EK YK+ +K
Sbjct: 601 RVSGGSFKTFVSVKGAPEVIATMLREVPKDYEKIYKDYGRK 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,118
Number of Sequences: 5004
Number of extensions: 47650
Number of successful extensions: 184
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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