Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0678.Seq
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 154 6e-38
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 93 1e-19
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 1e-18
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 71 5e-13
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 66 3e-11
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 66 3e-11
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 64 1e-10
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_732| Best HMM Match : AAA (HMM E-Value=0) 59 3e-09
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 58 4e-09
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 9e-09
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 52 4e-07
SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25) 46 3e-05
SB_58910| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_3478| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_19460| Best HMM Match : AAA (HMM E-Value=0) 40 0.001
SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_33137| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0) 28 5.0
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 28 5.0
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 28 5.0
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 28 5.0
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 28 5.0
SB_13828| Best HMM Match : HORMA (HMM E-Value=2.9) 28 5.0
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 154 bits (373), Expect = 6e-38
Identities = 83/112 (74%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Frame = -3
Query: 588 PRMVRXVFRLAKEIAQQSFSLMKLMPFY*K-I*RPNWCRREVQRILLELLNQMDGFDQTT 412
PRMVR VFRLAKE A + ++ K REVQRILLELLNQMDGFDQ
Sbjct: 243 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 302
Query: 411 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
NVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTIT KMNLS
Sbjct: 303 NVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITNKMNLS 354
>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 96.3 bits (229), Expect = 2e-20
Identities = 56/111 (50%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Frame = -3
Query: 585 RMVRXVFRLAKEIAQQSFSLMKLMPFY*K-I*RPNWCRREVQRILLELLNQMDGFDQTTN 409
++VR F LAKE A + +L K REVQR +LELLNQ+DGF +
Sbjct: 173 KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSHHD 232
Query: 408 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
+KVI ATNR D LDPALLR GRLDRKIEFP PD+ + I + KMN+S
Sbjct: 233 IKVIAATNRVDILDPALLRSGRLDRKIEFPNPDQEARARILQIHSRKMNVS 283
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 256 GEVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDESEYE 77
G+V+ +E D +GA + A+C EAGM A+R V +D+ G K ++
Sbjct: 284 GDVNFDELSRCTDDFNGAMLKAVCVEAGMIALRREATEVCHEDYMDGIMEVNAKKKANLV 343
Query: 76 FY 71
+Y
Sbjct: 344 YY 345
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
EVQR +LEL+NQ+DGFD N+KV+MATNR DTLDPAL+RPGRLDRK+EF LPD
Sbjct: 203 EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPD 256
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 89.8 bits (213), Expect = 1e-18
Identities = 41/54 (75%), Positives = 47/54 (87%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
EVQR +LELLNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+
Sbjct: 310 EVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPN 363
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 190 ICQEAGMHAVRENRYIVLPKDFE 122
+C EAGM+A+RE R V +DFE
Sbjct: 367 VCTEAGMYALRERRVHVTQEDFE 389
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E + L +LL +MDGF +TNV V+ TNR D LDPALLRPGR DR+I P PD + +
Sbjct: 167 ERENTLNQLLVEMDGFSSSTNVVVLSGTNRPDVLDPALLRPGRFDRQIHLPAPDIKGRCS 226
Query: 291 IF 286
IF
Sbjct: 227 IF 228
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F ++++P IIFIDEIDA+
Sbjct: 133 FAQARKNAPCIIFIDEIDAV 152
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/62 (53%), Positives = 39/62 (62%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 280
I+ LL MDG D V +I ATNR D +DPAL RPGR DR+ +F LPDR +R I S
Sbjct: 1009 IVSTLLALMDGLDSRGEVVIIGATNRIDAIDPALRRPGRFDREFQFALPDRDARRSILSI 1068
Query: 279 IT 274
T
Sbjct: 1069 HT 1070
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/69 (40%), Positives = 47/69 (68%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R++ +LL Q+DG + V ++ AT+R D +DPALLRPGRLD+ + P+PD+ +R +F
Sbjct: 786 RVVNQLLTQLDGVEGLKGVYILAATSRPDLIDPALLRPGRLDKCVYCPIPDQGDRREVFR 845
Query: 282 TITTKMNLS 256
++ + L+
Sbjct: 846 ALSHDLPLA 854
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
R++ ++L +MDG + NV +I ATNR D +DPA+LRPGRLD+ I PLPD
Sbjct: 432 RVINQVLTEMDGMNVKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 482
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
+RI+ +LL MDG Q ++V V+ ATNR +++D AL R GR DR+++ +PD + I
Sbjct: 179 RRIVSQLLTLMDGLKQRSHVIVMAATNRPNSVDVALRRFGRFDREVDIGIPDATGRLEIL 238
Query: 285 STITTKMNL 259
T M L
Sbjct: 239 RIHTKNMKL 247
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 256 GEVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
G+VDL+ SGAD+ ICQ A A+RE
Sbjct: 484 GDVDLDYVAKVTHGFSGADLTEICQRACKLAIRE 517
>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 60.9 bits (141), Expect = 8e-10
Identities = 33/73 (45%), Positives = 42/73 (57%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E RI+ +LL MDG + V VI ATNR + LDPAL RPGR DR++ +P Q+
Sbjct: 330 EENRIVAQLLTLMDGLESRGRVIVIGATNRPNALDPALRRPGRFDREVVIGVPSAGQRLD 389
Query: 291 IFSTITTKMNLSV 253
I +NLSV
Sbjct: 390 ILRAHCKPINLSV 402
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = -3
Query: 402 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI------FSTITTKMNLSV 253
++ ATNR + +D ALLRPGR+D I P PD + + I FS + ++LSV
Sbjct: 701 LVAATNRPEAIDGALLRPGRIDCMIYVPPPDMKARLEILRVHTRFSPLAPDVDLSV 756
>SB_732| Best HMM Match : AAA (HMM E-Value=0)
Length = 388
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 280
++ +LL ++DG +Q NV +I TNR D +D ALLRPGRL+ ++E LPD + I
Sbjct: 280 VVNQLLAKIDGVEQLNNVLLIGMTNRRDLIDDALLRPGRLEVQVEIGLPDEEGRVQILKI 339
Query: 279 ITTKM 265
T KM
Sbjct: 340 HTAKM 344
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/71 (43%), Positives = 41/71 (57%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E + L +LL +MDG + V ++ +TNRAD LD ALLRPGR DR I LP ++
Sbjct: 244 EQENTLNQLLVEMDGMNTLDGVIMLASTNRADILDNALLRPGRFDRHIAIDLPTLPERME 303
Query: 291 IFSTITTKMNL 259
IF K+ L
Sbjct: 304 IFEVHLKKLTL 314
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -2
Query: 211 SGADINAICQEAGMHAVRENRYIVLPKDFE 122
SGADI IC EA +HA R N+ V K+FE
Sbjct: 333 SGADIANICNEAALHAARLNKKNVDTKNFE 362
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 58.0 bits (134), Expect = 5e-09
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = -3
Query: 468 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL- 292
+ R++ +LL ++DG T +V VI ATNR D LDPALLRPGR D+ + + + +L
Sbjct: 929 MDRVVAQLLAELDGLHSTCDVFVIGATNRPDLLDPALLRPGRFDKLLYLGVSEDHHAQLS 988
Query: 291 IFSTITTKMNLS 256
+ +T K S
Sbjct: 989 VLKALTRKFTFS 1000
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 57.2 bits (132), Expect = 9e-09
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQT---TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
+R++ LL MDG T V V+ ATNR D LDPAL RPGR DR+IE +P +R
Sbjct: 374 RRVVATLLTLMDGMHMKSTDTYVMVLAATNRPDALDPALRRPGRFDREIEIGIPSVTDRR 433
Query: 294 LIFSTI 277
I T+
Sbjct: 434 DILVTL 439
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 313
R+L +LL ++DG + +V I ATNR D +D AL+RPGR+DR I PLP
Sbjct: 657 RVLTQLLTELDGVETLKDVIFIAATNRPDMIDKALMRPGRVDRLIYVPLP 706
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = -2
Query: 292 NLLDNHYQDEPF-GEVDLEEFVARPDRVSGADINAICQEAGMHAVREN 152
++L+ H P G +DLE+ V R + SGA+I A+C+EA + A++EN
Sbjct: 713 HILEIHLARTPCEGSLDLEDLVERTEGYSGAEIAAVCREAALAALQEN 760
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F Q SP+I+FIDE+DA+
Sbjct: 342 FTEAQNKSPSIVFIDELDAL 361
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = -3
Query: 492 RPNWCRREVQRILLELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFP 319
R N + +RI+ +LL+ MD + +V VI ATNR D+LDPAL R GR DR+I
Sbjct: 785 RENASKDMERRIVSQLLSCMDDLNNNPDAHVLVIGATNRPDSLDPALRRAGRFDREISMG 844
Query: 318 LPDRRQKRLI 289
+PD + I
Sbjct: 845 IPDESARARI 854
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAILLK 500
F S +P I+F+DEIDAI K
Sbjct: 762 FTSAVAQAPCILFLDEIDAITPK 784
>SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25)
Length = 420
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
LLN +DG + V M TN LDPAL+RPGR+D K E R Q +F+
Sbjct: 312 LLNTLDGVASSEERVVFMTTNHLKRLDPALIRPGRVDFKQEIDWASRSQLVRMFA 366
>SB_58910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = -2
Query: 247 DLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYK--NNIKKDESEYEF 74
D E V D +GAD+ +C EAGM A+R R V+ +DF K + ++ KK ES+ ++
Sbjct: 115 DYEAVVKLSDGFNGADLRNVCTEAGMFAIRGERDYVIEEDFMKAVRKVSDNKKLESKLDY 174
>SB_3478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -3
Query: 345 RLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
R+DRKIEFP+PD + KR IF+ T +M L+
Sbjct: 2 RIDRKIEFPMPDEKTKRRIFNIHTQRMTLA 31
>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
Length = 340
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = -3
Query: 402 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI------FSTITTKMNLSV 253
++ ATNR + +D ALLRPGR+D I P PD + + I FS + ++LSV
Sbjct: 234 LVAATNRPEAIDGALLRPGRIDCMIYVPPPDMKARLEILRVHTRFSPLAPDVDLSV 289
>SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLP 313
R+ ELL QMDG ++ + V ++ A+N LD A+LR RL+++I LP
Sbjct: 126 RMKTELLVQMDGLARSDDLVFLLAASNLPWELDHAMLR--RLEKRILVDLP 174
>SB_33137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 128 IFRKYNVSVFPDSVHAGLLTDGVDVGAGHAVRSSHELFQIHFTER 262
I K S PDS+ + + G DVG G +R+ EL + ++R
Sbjct: 147 IIPKGGPSTLPDSMFKIIDSTGPDVGGGPVMRNGLELLALAISDR 191
>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
Length = 1031
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 155 FPDSVHAGLLTDGVDVGAG---HAVRSSHELFQIHFTE 259
F D + LLT G+D G AVRS H+L IH E
Sbjct: 884 FMDLPQSPLLTMGMDTPLGWMVEAVRSPHDLDNIHLAE 921
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 158 PDSVHAGLLTDGVDVGAGHAVRSSHELFQIHFTERFILVVIVEKIKRF*RLSGRGNSIFL 337
PDS+ +L + + V A H V +HF +F+L V+ RL G F
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRLDKEGKLHFE 169
Query: 338 SRR 346
+++
Sbjct: 170 AKK 172
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 158 PDSVHAGLLTDGVDVGAGHAVRSSHELFQIHFTERFILVVIVEKIKRF*RLSGRGNSIFL 337
PDS+ +L + + V A H V +HF +F+L V+ RL G F
Sbjct: 344 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRLDKEGKLHFE 403
Query: 338 SRR 346
+++
Sbjct: 404 AKK 406
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 158 PDSVHAGLLTDGVDVGAGHAVRSSHELFQIHFTERFILVVIVEKIKRF*RLSGRGNSIFL 337
PDS+ +L + + V A H V +HF +F+L V+ RL G F
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRLDKEGKLHFE 169
Query: 338 SRR 346
+++
Sbjct: 170 AKK 172
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 158 PDSVHAGLLTDGVDVGAGHAVRSSHELFQIHFTERFILVVIVEKIKRF*RLSGRGNSIFL 337
PDS+ +L + + V A H V +HF +F+L V+ RL G F
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRLDKEGKLHFE 169
Query: 338 SRR 346
+++
Sbjct: 170 AKK 172
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 158 PDSVHAGLLTDGVDVGAGHAVRSSHELFQIHFTERFILVVIVEKIKRF*RLSGRGNSIFL 337
PDS+ +L + + V A H V +HF +F+L V+ RL G F
Sbjct: 110 PDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRLDKEGKLHFE 169
Query: 338 SRR 346
+++
Sbjct: 170 AKK 172
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 246 IWKSSWLDRTACPAP-TSTPSVRRPACT 166
+WK W ACP P T+ VR PA T
Sbjct: 14 LWKHGWPSVLACPRPLTAVAQVRIPAQT 41
>SB_13828| Best HMM Match : HORMA (HMM E-Value=2.9)
Length = 225
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -3
Query: 480 CRREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 301
C++ +QR +L LL F Q +M+T T +P PG +E P P+ Q
Sbjct: 113 CKKVIQRCVLLLLGVKSSFPQDAEFLALMSTANKATCEPQ-AAPG---DPVEVPRPEPLQ 168
>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 227 STGPRVRRRHQRHLSG 180
ST P+ +RRH RH SG
Sbjct: 566 STSPKAKRRHHRHSSG 581
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,059
Number of Sequences: 59808
Number of extensions: 358328
Number of successful extensions: 888
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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