Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0678.Seq
         (590 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.2  
DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.        23   7.4  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.8  
AY787484-1|AAV87217.1|   70|Anopheles gambiae GABA receptor subu...    23   9.8  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 128  IFRKYNVSVFPDSVHAGLLTDGVDVGAGHAVRSS 229
            +FRK  ++   D+   G     +D+  G+ VR +
Sbjct: 1244 VFRKIKIATGADTSRFGWYEQTIDIATGNTVRKA 1277



 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 152 VFPDSVHAGLLTDGVDVGA 208
           + P+  HAG L D +D+G+
Sbjct: 397 IIPNRYHAGWLHDQLDMGS 415


>DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.
          Length = 494

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 210 PAPTSTPSVRRPACTLSGK--TDTLYFLKISKRVTRITSRKMRANMNFI 70
           PA +S  ++RR   TL+GK     +  +K+   + R+    +R +++ +
Sbjct: 348 PANSSRTAIRRLQATLTGKMLDSWISQMKLQSTMVRLPKMHLRNSVDLL 396


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 110 LVTLFEIFRKYNVSVFPDSVHAG--LLTDG 193
           L T FE+ RKYN S      +    L+TDG
Sbjct: 355 LETAFELLRKYNQSSQGSQCNQAIMLITDG 384


>AY787484-1|AAV87217.1|   70|Anopheles gambiae GABA receptor subunit
           protein.
          Length = 70

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 243 WKSSWLDRTACPA 205
           W S WL+R A PA
Sbjct: 17  WVSFWLNRNATPA 29


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,857
Number of Sequences: 2352
Number of extensions: 12349
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56768445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)