Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0678.Seq
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.97 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.97 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 243 WKSSWLDRTACPAPTS 196
           W S WLD++A PA  S
Sbjct: 260 WVSFWLDQSAVPARVS 275


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 243 WKSSWLDRTACPAPTS 196
           W S WLD++A PA  S
Sbjct: 260 WVSFWLDQSAVPARVS 275


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = -1

Query: 554 KR*PSNHFH**N*CHSTKRFDAQTGAAEKFKGFYLNSSTKWMVXXXXXXXXX*WRQIVLI 375
           KR  +NH H       ++  D++TG   + +   L    +WM+           ++ +++
Sbjct: 2   KRNTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMIL 61

Query: 374 HWTLR 360
            + LR
Sbjct: 62  EYELR 66


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 243 WKSSWLDRTACPA 205
           W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 243 WKSSWLDRTACPA 205
           W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 243 WKSSWLDRTACPA 205
           W S WL+R A PA
Sbjct: 178 WVSFWLNRNATPA 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,513
Number of Sequences: 438
Number of extensions: 3233
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)