Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0678.Seq
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 150 8e-37
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 110 6e-25
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 110 6e-25
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 101 3e-22
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 95 2e-20
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 93 1e-19
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 92 2e-19
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 91 4e-19
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 91 4e-19
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 91 4e-19
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 91 4e-19
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 69 2e-12
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 68 4e-12
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 66 2e-11
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 65 3e-11
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 65 3e-11
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 65 3e-11
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 64 7e-11
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 64 7e-11
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 63 2e-10
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 62 2e-10
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 62 2e-10
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 62 4e-10
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 61 5e-10
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 60 1e-09
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 59 3e-09
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 58 3e-09
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 58 3e-09
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 58 6e-09
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 58 6e-09
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 57 8e-09
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 56 1e-08
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 56 2e-08
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 56 2e-08
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 56 2e-08
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 55 3e-08
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 53 2e-07
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 50 1e-06
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 46 2e-05
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 46 2e-05
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 46 2e-05
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 42 2e-04
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 40 0.001
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 40 0.001
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 40 0.001
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 40 0.002
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 40 0.002
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 39 0.002
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 39 0.003
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 39 0.003
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 38 0.004
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 38 0.004
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 38 0.004
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 38 0.007
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 38 0.007
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 37 0.009
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 37 0.009
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 37 0.012
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 36 0.020
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 36 0.020
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 36 0.020
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 36 0.027
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 35 0.047
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 34 0.062
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 34 0.062
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 34 0.082
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 33 0.19
At4g05340.1 68417.m00816 hypothetical protein 33 0.19
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 32 0.33
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 32 0.33
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 31 0.57
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 31 0.57
At4g21585.1 68417.m03124 bifunctional nuclease, putative similar... 28 4.1
At4g14210.2 68417.m02193 phytoene dehydrogenase, chloroplast / p... 27 7.1
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 27 7.1
At4g14210.1 68417.m02192 phytoene dehydrogenase, chloroplast / p... 27 9.4
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 27 9.4
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 27 9.4
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 150 bits (363), Expect = 8e-37
Identities = 79/112 (70%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Frame = -3
Query: 588 PRMVRXVFRLAKEIAQQSFSLMKLMPFY*-KI*RPNWCRREVQRILLELLNQMDGFDQTT 412
PRMVR VFRLAKE A + ++ + REVQRIL+ELLNQMDGFDQT
Sbjct: 234 PRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV 293
Query: 411 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F T+KMNLS
Sbjct: 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLS 345
Score = 107 bits (257), Expect = 5e-24
Identities = 43/62 (69%), Positives = 58/62 (93%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDESEYEF 74
EVDLE++V+RPD++S A+I AICQEAGMHAVR+NRY++LPKDFEKGY+ N+KK ++++EF
Sbjct: 347 EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEF 406
Query: 73 YK 68
YK
Sbjct: 407 YK 408
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 110 bits (265), Expect = 6e-25
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Frame = -3
Query: 588 PRMVRXVFRLAKEIAQQSFSLMKLMPFY*K-I*RPNWCRREVQRILLELLNQMDGFDQTT 412
P++VR +FR+A +++ + ++ K + RE+QR +LELLNQ+DGFD
Sbjct: 267 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 326
Query: 411 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
+VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF T+KM LS
Sbjct: 327 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLS 378
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKG-YKNNIKKDE 89
+V+LEEFV D SGADI AIC EAG+ A+RE R V DF+K K KK E
Sbjct: 380 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKE 435
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 110 bits (265), Expect = 6e-25
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Frame = -3
Query: 588 PRMVRXVFRLAKEIAQQSFSLMKLMPFY*KI*RPN-WCRREVQRILLELLNQMDGFDQTT 412
P++VR +FR+A +++ + ++ K N RE+QR +LELLNQ+DGFD
Sbjct: 267 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRG 326
Query: 411 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
+VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R IF T+KM L+
Sbjct: 327 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLA 378
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKG-YKNNIKKDE 89
+V+LEEFV D SGADI AIC EAG+ A+RE R V DF+K K KK E
Sbjct: 380 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKE 435
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 101 bits (243), Expect = 3e-22
Identities = 54/105 (51%), Positives = 66/105 (62%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
EVQR +LE++NQ+DGFD N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD +
Sbjct: 287 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 346
Query: 291 IFSTITTKMNLSVKWIWKSSWLDRTACPAPTSTPSVRRPACTLSG 157
IF T MN + + A P ST + R CT +G
Sbjct: 347 IFKIHTRTMNCE-----RDIRFELLARLCPNSTGADIRSVCTEAG 386
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -2
Query: 211 SGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIK 98
+GADI ++C EAGM+A+R R V KDF IK
Sbjct: 374 TGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIK 411
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 95.5 bits (227), Expect = 2e-20
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
RE+QR L+ELLNQ+DGFDQ VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +
Sbjct: 257 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 315
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -2
Query: 256 GEVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYK--NNIKKDESE 83
GE+D E V + +GAD+ IC EAGM A+R R V+ +DF K + + KK ES
Sbjct: 330 GEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESS 389
Query: 82 YEF 74
+
Sbjct: 390 SHY 392
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 93.5 bits (222), Expect = 1e-19
Identities = 42/59 (71%), Positives = 49/59 (83%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
RE+QR L+ELLNQ+DGFD VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +
Sbjct: 257 REIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 315
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = -2
Query: 256 GEVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYK--NNIKKDESE 83
GE+D E V + +GAD+ IC EAGM A+R R V+ +DF K + + KK ES
Sbjct: 330 GEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESS 389
Query: 82 YEF 74
+
Sbjct: 390 SHY 392
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 92.3 bits (219), Expect = 2e-19
Identities = 44/70 (62%), Positives = 52/70 (74%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
EVQR +LE+L Q+DGFD N+KV+MATNR D LDPALLRPGRLDRK+EF LPD +
Sbjct: 324 EVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQ 383
Query: 291 IFSTITTKMN 262
IF T M+
Sbjct: 384 IFKIHTRTMS 393
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 211 SGADINAICQEAGMHAVRENRYIVLPKDF 125
+GADI ++C EAGM+A+ R V KDF
Sbjct: 411 TGADIRSVCIEAGMYAIGARRKSVTEKDF 439
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
EVQR +LELLNQ+DGF+ + +KV+MATNR D LD ALLRPGR+DRKIEFP P+ +
Sbjct: 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFD 340
Query: 291 IFSTITTKMNL 259
I + KMNL
Sbjct: 341 ILKIHSRKMNL 351
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = -2
Query: 250 VDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKD 92
+DL++ + + SGA++ A+C EAGM A+RE R V +DFE +KKD
Sbjct: 355 IDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
EVQR +LELLNQ+DGF+ + +KV+MATNR D LD ALLRPGR+DRKIEFP P+ +
Sbjct: 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFD 340
Query: 291 IFSTITTKMNL 259
I + KMNL
Sbjct: 341 ILKIHSRKMNL 351
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = -2
Query: 250 VDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKD 92
+DL++ + + SGA++ A+C EAGM A+RE R V +DFE +KKD
Sbjct: 355 IDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 91.5 bits (217), Expect = 4e-19
Identities = 44/72 (61%), Positives = 51/72 (70%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
REVQR +LELLNQ+DGF +KVI ATNRAD LDPAL+R GRLDRKIEFP P +
Sbjct: 289 REVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARA 348
Query: 294 LIFSTITTKMNL 259
I + KMN+
Sbjct: 349 RILQIHSRKMNV 360
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDESEYEF 74
+V+ EE D +GA + A+C EAGM A+R + V +DF +G K ++ +
Sbjct: 363 DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNY 422
Query: 73 Y 71
Y
Sbjct: 423 Y 423
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + +P IIFIDEIDAI
Sbjct: 257 FQLAKEKAPCIIFIDEIDAI 276
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 91.5 bits (217), Expect = 4e-19
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
REVQR +LELLNQ+DGF +KVI ATNRAD LDPAL+R GRLDRKIEFP P +
Sbjct: 288 REVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARG 347
Query: 294 LIFSTITTKMNLS 256
I + KMN++
Sbjct: 348 RILQIHSRKMNVN 360
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDESEYEF 74
+V+ EE D +GA + A+C EAGM A+R + V +DF +G K ++ +
Sbjct: 362 DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNY 421
Query: 73 Y 71
Y
Sbjct: 422 Y 422
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + SP IIFIDEIDAI
Sbjct: 256 FLLAKEKSPCIIFIDEIDAI 275
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 68.9 bits (161), Expect = 2e-12
Identities = 33/65 (50%), Positives = 42/65 (64%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R+L +LL +MDG + V +I ATNR D +DPALLRPGRLD+ I PLPD + IF
Sbjct: 603 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFK 662
Query: 282 TITTK 268
+ K
Sbjct: 663 SCLRK 667
Score = 54.0 bits (124), Expect = 7e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
+RI+ +LL MDG +V V+ ATNR +++DPAL R GR DR+I+ +PD + +
Sbjct: 326 RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVL 385
Query: 285 STITTKMNLS 256
T M L+
Sbjct: 386 RIHTKNMKLA 395
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYK 110
+VDL SGADI ICQ + +A+REN + KD EK K
Sbjct: 673 DVDLRALAKYTQGFSGADITEICQRSCKYAIREN----IEKDIEKERK 716
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAILLK 500
F ++++P+IIFIDEID+I K
Sbjct: 294 FEEAEKNAPSIIFIDEIDSIAPK 316
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIV 140
+VDLE GAD+ A+C EA + +RE ++
Sbjct: 397 DVDLERVSKDTHGYVGADLAALCTEAALQCIREKMDVI 434
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 68.1 bits (159), Expect = 4e-12
Identities = 35/71 (49%), Positives = 45/71 (63%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
QR++ LLN MDG +T V VI ATNR D+++PAL RPGRLDR+IE +P Q+ I
Sbjct: 502 QRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDIL 561
Query: 285 STITTKMNLSV 253
I M S+
Sbjct: 562 HIILRGMRHSL 572
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R++ +LL ++DG Q V VI ATNR D +D ALLRPGR DR + P+ + I
Sbjct: 845 RVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILK 904
Query: 282 TITTKMNLS 256
K+ S
Sbjct: 905 IHLRKIPCS 913
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVREN 152
++ L+E + +GADI+ IC+EA + A+ E+
Sbjct: 915 DICLKELASITKGYTGADISLICREAAIAALEES 948
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F S +PA++FID++DAI
Sbjct: 470 FRSASNATPAVVFIDDLDAI 489
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E ++ L +LL +MDGFD ++ V V+ ATNRAD LDPAL RPGR DR + PD+ +
Sbjct: 448 EREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRES 507
Query: 291 IFSTITTKMNL 259
I +K L
Sbjct: 508 ILKVHVSKKEL 518
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F ++++P+IIFIDEIDA+
Sbjct: 414 FARAKKEAPSIIFIDEIDAV 433
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 65.3 bits (152), Expect = 3e-11
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E ++ L +LL +MDGFD + V V+ ATNRAD LDPAL RPGR DR + PD+ +
Sbjct: 444 EREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRES 503
Query: 291 IFSTITTKMNL 259
I +K L
Sbjct: 504 ILRVHVSKKEL 514
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F ++++P+IIFIDEIDA+
Sbjct: 410 FARAKKEAPSIIFIDEIDAV 429
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
E ++ L +LL +MDGF+ T V V+ ATNRAD LD ALLRPGR DR++ +PD
Sbjct: 345 EREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPD 398
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + ++P I+F+DEIDA+
Sbjct: 312 FKKAKENAPCIVFVDEIDAV 331
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
E ++ L +LL +MDGF+ T V V+ ATNRAD LD ALLRPGR DR++ +PD
Sbjct: 338 EREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPD 391
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + ++P I+F+DEIDA+
Sbjct: 305 FKKAKENAPCIVFVDEIDAV 324
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R+L +LL +MDG + V +I ATNR D +D ALLRPGRLD+ I PLPD + IF
Sbjct: 602 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFK 661
Query: 282 TITTK 268
K
Sbjct: 662 ACLRK 666
Score = 54.0 bits (124), Expect = 7e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
+RI+ +LL MDG +V V+ ATNR +++DPAL R GR DR+I+ +PD + +
Sbjct: 325 RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVL 384
Query: 285 STITTKMNLS 256
T M L+
Sbjct: 385 RIHTKNMKLA 394
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVREN 152
+VD+ SGADI ICQ A +A+REN
Sbjct: 672 DVDVTALAKYTQGFSGADITEICQRACKYAIREN 705
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIV 140
+VDLE GAD+ A+C EA + +RE ++
Sbjct: 396 DVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVI 433
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAILLK 500
F ++++P+IIFIDEID+I K
Sbjct: 293 FEEAEKNAPSIIFIDEIDSIAPK 315
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 283
R+L +LL +MDG + V +I ATNR D +D ALLRPGRLD+ I PLPD + IF
Sbjct: 603 RVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFK 662
Query: 282 TITTK 268
K
Sbjct: 663 AALRK 667
Score = 54.0 bits (124), Expect = 7e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
+RI+ +LL MDG +V V+ ATNR +++DPAL R GR DR+I+ +PD + +
Sbjct: 325 RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVL 384
Query: 285 STITTKMNLS 256
T M L+
Sbjct: 385 RIHTKNMKLA 394
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEK 119
+VD+ SGADI ICQ A +A+REN + KD EK
Sbjct: 673 DVDIGALAKYTQGFSGADITEICQRACKYAIREN----IEKDIEK 713
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIV 140
+VDLE GAD+ A+C EA + +RE ++
Sbjct: 396 DVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVI 433
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAILLK 500
F ++++P+IIFIDEID+I K
Sbjct: 293 FEEAEKNAPSIIFIDEIDSIAPK 315
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 62.9 bits (146), Expect = 2e-10
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E ++ L ++L +MDGF T V VI ATNR + LD ALLRPGR DR++ LPD R +
Sbjct: 341 EREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREE 400
Query: 291 IFSTITTKMNLSVKWIWKSSWLDRTACPAPTSTPSVRRPACTLSGK--TDTLYFLKISKR 118
I + L K + S RT + ++ A L+G+ D + +I
Sbjct: 401 ILKVHSRSKKLD-KDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEIDDS 459
Query: 117 VTRITS 100
+ RI +
Sbjct: 460 IDRIVA 465
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + +SP I+FIDEIDA+
Sbjct: 308 FNKAKANSPCIVFIDEIDAV 327
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/71 (46%), Positives = 41/71 (57%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E + L +LL +MDGF T V V+ TNR D LD ALLRPGR DR+I PD + +
Sbjct: 440 ERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 499
Query: 291 IFSTITTKMNL 259
IF K+ L
Sbjct: 500 IFKIYLKKIKL 510
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F ++ +P+IIFIDEIDAI
Sbjct: 407 FQEARQAAPSIIFIDEIDAI 426
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/71 (46%), Positives = 41/71 (57%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E + L +LL +MDGF T V V+ TNR D LD ALLRPGR DR+I PD + +
Sbjct: 446 ERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQ 505
Query: 291 IFSTITTKMNL 259
IF K+ L
Sbjct: 506 IFQIYLKKIKL 516
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F ++ +P+IIFIDEIDAI
Sbjct: 412 FQEARQCAPSIIFIDEIDAI 431
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = -3
Query: 492 RPNWCRREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 313
R W ++ L +LL +MDGF+Q + V+ ATN D LDPAL RPGR DR I P P
Sbjct: 470 RKQW-EGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSP 528
Query: 312 DRRQKRLI 289
D R + I
Sbjct: 529 DVRGREEI 536
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + ++ +P IIFIDEIDA+
Sbjct: 447 FQAAKKKAPCIIFIDEIDAV 466
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 61.3 bits (142), Expect = 5e-10
Identities = 33/77 (42%), Positives = 45/77 (58%)
Frame = -3
Query: 486 NWCRREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 307
N +E + L +LL ++DGFD V + ATNR D LDPALLRPGR DRKI P+
Sbjct: 551 NAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNA 610
Query: 306 RQKRLIFSTITTKMNLS 256
+ + I +K+ +S
Sbjct: 611 KGRLDILKIHASKVKMS 627
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 250 VDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFE 122
VDL + + SGA + + QEA + AVR+ +L D +
Sbjct: 630 VDLSSYASNLPGWSGAKLAQLVQEAALVAVRKTHNSILQSDMD 672
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/63 (47%), Positives = 39/63 (61%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
E + L +LL +MDGF+ T V VI ATNR + LD AL RPGR RK+ PD+ +R
Sbjct: 449 ERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRRK 508
Query: 291 IFS 283
I +
Sbjct: 509 ILA 511
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + +++SP+IIFIDE+DA+
Sbjct: 419 FNAARKNSPSIIFIDELDAV 438
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/65 (46%), Positives = 40/65 (61%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 280
I+ +LL ++DG + NV +I TNR D LD ALLRPGRL+ ++E LPD + I
Sbjct: 347 IVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQI 406
Query: 279 ITTKM 265
T KM
Sbjct: 407 HTNKM 411
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
E ++ + +LL +MDGF + V V+ ATNR D LD ALLRPGR DR++ PD
Sbjct: 368 EREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPD 421
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + +P I+FIDEIDA+
Sbjct: 335 FEKAKSKAPCIVFIDEIDAV 354
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 310
E ++ + +LL +MDGF + V V+ ATNR D LD ALLRPGR DR++ PD
Sbjct: 380 EREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPD 433
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + +P I+FIDEIDA+
Sbjct: 347 FEKAKSKAPCIVFIDEIDAV 366
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 57.6 bits (133), Expect = 6e-09
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 307
E ++ LL++L +MDGF TT+ V VI ATNR D LDPALLR GR D+ I LP +
Sbjct: 435 EREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSK 490
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F S + +P+IIFIDEIDAI
Sbjct: 401 FASSRSYAPSIIFIDEIDAI 420
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 57.6 bits (133), Expect = 6e-09
Identities = 35/81 (43%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 280
++ LL +DG +V VI ATN D +DPAL RPGR DR+I FPLP + I S
Sbjct: 844 VVSTLLALLDGLKSRGSVVVIGATNYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISL 903
Query: 279 ITTKMNLSV-----KWIWKSS 232
T K V KWI K +
Sbjct: 904 HTRKWPKPVSGYLLKWIAKET 924
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 57.2 bits (132), Expect = 8e-09
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = -3
Query: 462 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI--EFPLPDRR 304
R++ + L ++DG + T V V AT+R D LDPALLRPGRLDR + +FP P R
Sbjct: 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPER 1017
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 253 EVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
++DLE + SGAD+ A+ +A + AV E
Sbjct: 1033 DIDLEPIALMTEGFSGADLQALLSDAQLAAVHE 1065
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 56.4 bits (130), Expect = 1e-08
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = -3
Query: 585 RMVRXVFRLAKEIAQQSFSLMKLMPFY*KI*RPNWCRREVQRILLELLNQMDGFDQTTNV 406
R++ VF A E+ + + + + I R + +R+L LL Q+DGF+Q V
Sbjct: 407 RLLGAVFSQANELPDGAIIFLDEIDAF-AISRDSEMHEATRRVLSVLLRQIDGFEQEKKV 465
Query: 405 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMN 262
VI ATNR LDPAL+ R D I F LPD + ++ I + +++
Sbjct: 466 VVIAATNRKQDLDPALI--SRFDSMIMFDLPDLQTRQEIIAQYAKQLS 511
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 313
+E L +LL +DGF+ V I +TNR D LDPAL+RPGR DRKI P P
Sbjct: 527 QERDATLNQLLVSLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKP 580
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = -3
Query: 468 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI 289
V+R+L + L ++DG ++ NV VI ATNR D +DPA LRPGR + PLP+ ++ I
Sbjct: 645 VERLLNQFLVELDGGERR-NVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASI 703
Query: 288 FSTITTK 268
I K
Sbjct: 704 LKAIARK 710
Score = 47.2 bits (107), Expect = 8e-06
Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Frame = -3
Query: 492 RPNWCRREVQRILLELLNQMDGF---------DQTTN-VKVIMATNRADTLDPALLRPGR 343
R N R +RI+ +LL MDG D + V VI ATNR D LDPAL R GR
Sbjct: 342 RENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGR 401
Query: 342 LDRKIEFPLPDRRQKRLIFSTITTKMNL 259
+ +I PD + I S + K+ L
Sbjct: 402 FETEIALTAPDEDARAEILSVVAQKLRL 429
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F R +P+I+FIDEIDAI
Sbjct: 319 FSKAYRTAPSIVFIDEIDAI 338
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = -3
Query: 456 LLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTI 277
L ++L ++DGF Q + V+ ATN ++LD AL+RPGR DR I P PD +R I +
Sbjct: 347 LNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESH 406
Query: 276 TTKM 265
+K+
Sbjct: 407 MSKV 410
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F + ++ SP IIFIDEIDAI
Sbjct: 312 FSAAKKCSPCIIFIDEIDAI 331
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 55.2 bits (127), Expect = 3e-08
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 286
+R+L LL +MDG ++ + V+ ATNR +D AL+RPGR D + P PD + I
Sbjct: 408 ERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEIL 467
Query: 285 STITTKMNL 259
T M L
Sbjct: 468 QVHTRNMTL 476
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 477 RREVQRILLELLNQMDGFDQTTN---VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 307
R + RI +L MD +++ V V+ +TNR D +DPAL R GR D +E P+
Sbjct: 139 REQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNE 198
Query: 306 RQKRLIFSTITTKMNL 259
+ I T K+NL
Sbjct: 199 EDRLKILQLYTKKVNL 214
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -2
Query: 295 FNLLDNHYQDEPFGE-VDLEEFVARPDRVSGADINAICQEAGMHAVREN 152
F +L H ++ G+ VDL + D +GA++ +C+E+G ++REN
Sbjct: 464 FEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLCRESGTVSLREN 512
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/64 (45%), Positives = 34/64 (53%)
Frame = -3
Query: 459 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 280
I+ LL MDG D V +I ATNR D +D AL RPGR DR+ F LP + I
Sbjct: 506 IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFSLPGCEARAEILDI 565
Query: 279 ITTK 268
T K
Sbjct: 566 HTRK 569
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F QR+ P+IIF DEID +
Sbjct: 472 FEEAQRNQPSIIFFDEIDGL 491
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 241 EEFVARPDRVSGADINAICQEAGMHAVRE 155
EE A GAD+ A+C EA + A RE
Sbjct: 580 EELAATCVGYCGADLKALCTEAAIRAFRE 608
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = -3
Query: 468 VQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL-PDRRQKR 295
+ R++ ++L ++DG D + ++ +I A+NR D +DPALLRPGR D+ + + D +
Sbjct: 776 MDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRE 835
Query: 294 LIFSTITTKMNLS 256
+ +T K LS
Sbjct: 836 RVLKALTRKFKLS 848
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = -3
Query: 585 RMVRXVFRLAKEIAQQSFSLMKLMPFY*KI*RPNWCRREVQRIL-LELLNQMDGFDQTTN 409
+++R +F LA+ A + L ++ + E R L ELL QMDG +T
Sbjct: 191 KLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNE 250
Query: 408 -VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTI 277
V V+ ATN LD A+LR RL+++I PLPD +R +F +
Sbjct: 251 LVFVLAATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEML 293
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -2
Query: 289 LLDNHYQDEPFGEVDLEEFVARPDRVSGADINAICQEAGMH------AVRENRYIVLPKD 128
L+ + DEP + V + + SG+DI +C+EA M A+ E+R V+P+D
Sbjct: 293 LIPSQPGDEPLPH---DVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPED 349
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = -3
Query: 585 RMVRXVFRLAKEIAQQSFSLMKLMPFY*KI*RPNWCRREVQRIL-LELLNQMDGFDQTTN 409
+++R +F LA+ A + L ++ + E R L ELL QMDG +T
Sbjct: 182 KLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNE 241
Query: 408 -VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTI 277
V V+ ATN LD A+LR RL+++I PLPD +R +F +
Sbjct: 242 LVFVLAATNLPWELDAAMLR--RLEKRILVPLPDPEARRGMFEML 284
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -2
Query: 289 LLDNHYQDEPFGEVDLEEFVARPDRVSGADINAICQEAGMH------AVRENRYIVLPKD 128
L+ + DEP + V + + SG+DI +C+EA M A+ E+R V+P+D
Sbjct: 284 LIPSQPGDEPLPH---DVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPED 340
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = -3
Query: 435 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS 256
+D F V I ATNR D LD +R GR+DR++ LPD +Q+ IF + NL+
Sbjct: 627 IDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLA 686
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 568 FPSCQRDSPAIIFIDEIDAI 509
F +R++PA +F+DEIDAI
Sbjct: 577 FSIARRNAPAFVFVDEIDAI 596
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = -3
Query: 465 QRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 292
+R+ E L Q DG + V +I ATN+ LD A+LR RL ++I PLPD ++L
Sbjct: 333 RRLKSEFLIQFDGVTSNPDDLVIIIGATNKPQELDDAVLR--RLVKRIYVPLPDSNVRKL 390
Query: 291 IFST 280
+F T
Sbjct: 391 LFKT 394
Score = 33.9 bits (74), Expect = 0.082
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 271 QDEPFGEVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
Q + D+++ V + SG+D+ A+C+EA M +RE
Sbjct: 399 QPHSLSDGDIDKIVKETEGYSGSDLQALCEEAAMMPIRE 437
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = -3
Query: 474 REVQRILLELLNQMDG-FDQTTNVKVIM-ATNRADTLDPALLRPGRLDRKIE 325
RE + L LLN +DG + + K+I+ TN D LDPAL+R GR+D IE
Sbjct: 339 RESKVTLSGLLNAIDGLWSACSGEKIIVFTTNYLDKLDPALIRRGRMDNHIE 390
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -3
Query: 477 RREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
+++ + + +LL ++DGF++ V ++ T +D AL RPGR+DR P ++
Sbjct: 541 QQDHESFINQLLVELDGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPTEMER 600
Query: 297 RLI 289
I
Sbjct: 601 ERI 603
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKI 328
LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 344 LLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHI 385
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
E QR L L G DQ+ ++ +++ATNR LD A+ R+D IEFPLP ++
Sbjct: 452 EAQRSALNALLFRTG-DQSRDIVLVLATNRRGDLDSAV--TDRIDEVIEFPLPGEEER 506
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
E QR L L G DQ+ ++ +++ATNR LD A+ R+D IEFPLP ++
Sbjct: 467 EAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDSAV--TDRIDEVIEFPLPGEEER 521
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDG-FDQTTNVKVIM-ATNRADTLDPALLRPGRLDRKI 328
LLN +DG + N ++I+ TN + LDPALLRPGR+D I
Sbjct: 339 LLNCIDGLWSSCGNERIIIFTTNNKEKLDPALLRPGRMDMHI 380
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 LLNQMDG-FDQTTNVKVIM-ATNRADTLDPALLRPGRLDRKIE 325
LLN +DG + + K+I+ TN D LDPAL+R GR+D IE
Sbjct: 349 LLNSIDGLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHIE 391
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLD 337
EV L LLN +DG + + +I TN + LDPALLRPGR+D
Sbjct: 333 EVGISLSGLLNFVDGLWSSCGEEKIIIFTTNHKEKLDPALLRPGRMD 379
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDG-FDQTTNVKVIM-ATNRADTLDPALLRPGRLDRKI 328
LLN +DG + N ++I+ TN + LDPALLRPGR+D I
Sbjct: 335 LLNFVDGLWSSCGNERIIVFTTNYREKLDPALLRPGRMDMHI 376
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 474 REVQRILLELLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 325
+E + L LLN +DG + ++ TN D LDPAL+R GR+D+ IE
Sbjct: 339 KESKVTLSGLLNFIDGLWSACGGERIIVFTTNFVDKLDPALIRKGRMDKHIE 390
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 LLNQMDG-FDQTTNVKVIM-ATNRADTLDPALLRPGRLDRKIE 325
LLN +DG + ++ K+I+ TN D LDPAL+R GR+D IE
Sbjct: 333 LLNAIDGLWSACSDEKIIIFTTNFVDNLDPALIRRGRMDYHIE 375
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
E QR L L G DQ+ ++ + +ATNR LD A+ R+D +EFPLP ++
Sbjct: 480 EAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDSAV--ADRIDETLEFPLPGEEER 534
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKI 328
LLN +DG + + ++ TN + LDPALLRPGR+D I
Sbjct: 335 LLNFVDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDMHI 376
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 325
LLN +DG + ++ TN D LDPAL+R GR+D+ IE
Sbjct: 350 LLNFIDGLWSACGGERIIVFTTNFIDKLDPALIRKGRMDKHIE 392
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = -3
Query: 477 RREVQRILLELLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLD 337
+++ + L LLN +DG + + +I TN + LDPALLRPGR+D
Sbjct: 119 KKDPKVTLSGLLNFVDGLWSSCVEERIIIFTTNHKEKLDPALLRPGRMD 167
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = -3
Query: 471 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 298
E QR L L G DQ+ ++ + +ATNR LD A+ R+D +EFPLP ++
Sbjct: 479 EAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDSAV--ADRVDEVLEFPLPGEEER 533
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 325
LLN +DG + V+ TN + LDPAL+R GR+D IE
Sbjct: 337 LLNFIDGIWSACGQERIVVFTTNHLEKLDPALIRRGRMDMHIE 379
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKI 328
LLN +DG + + VI TN + LDPALLRPG +D I
Sbjct: 311 LLNCIDGLWSSCGDERIVIFTTNNKEVLDPALLRPGCMDMHI 352
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 35.9 bits (79), Expect = 0.020
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLD 337
+LN +DG + + ++ TN + LDPALLRPGR+D
Sbjct: 331 ILNFIDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMD 369
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 325
LLN +DG + +I TN + LDPAL+R GR+D IE
Sbjct: 335 LLNFIDGIWSACGQERIIIFTTNHFEKLDPALIRRGRMDMHIE 377
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 378 DTLDPALLRPGRLDRKIEFPLPD 310
+ +DPA+LRPGR+D I FPL D
Sbjct: 333 EQIDPAMLRPGRVDVHIHFPLCD 355
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 402 VIMATNRADTLDPALLRPGRLDRKI 328
VI T + LDPALLRPGR+D I
Sbjct: 351 VIFTTTHKERLDPALLRPGRMDMHI 375
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKI 328
LLN +DG + + +I TN + LD ALLRPGR+D I
Sbjct: 393 LLNFIDGLWSSCGDERIIIFTTNYKEKLDAALLRPGRMDMHI 434
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 325
LLN +DG + ++ TN LDPAL+R GR+D IE
Sbjct: 336 LLNFIDGIWSACGQERIIVFTTNHLAKLDPALIRRGRMDMHIE 378
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 468 VQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
+++I E + DG + V+ ATNR LD A++R R +R+I LP +
Sbjct: 532 MRKIKNEFMTHWDGLMSNAGDRILVLAATNRPFDLDEAIIR--RFERRIMVGLPSVESRE 589
Query: 294 LIFSTITTK 268
I T+ +K
Sbjct: 590 KILRTLLSK 598
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -2
Query: 250 VDLEEFVARPDRVSGADINAICQEAGMHAVRENRYIVLPKDFEKGYKNNIKKDESE 83
+D +E D SG+D+ C A VRE KD E+ + +K+ E
Sbjct: 604 LDFQELAQMTDGYSGSDLKNFCTTAAYRPVRELIKQECLKDQERRKREEAEKNSEE 659
>At4g05340.1 68417.m00816 hypothetical protein
Length = 96
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 402 VIMATNRADTLDPALLRPGRLD 337
+I TN + LDPA LRPG++D
Sbjct: 49 IIFTTNHKEKLDPAFLRPGKMD 70
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKI 328
LLN DG + + TN + LDPALLR GR+D I
Sbjct: 350 LLNFTDGLWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 391
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 447 LLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKI 328
LLN DG + + TN + LDPALLR GR+D I
Sbjct: 341 LLNFTDGLWSCCGSERIFVFTTNHIEKLDPALLRSGRMDMHI 382
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 468 VQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
+++I E ++ DG + V+ ATNR LD A++R R +R+I LP +
Sbjct: 639 MRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPAVENRE 696
Query: 294 LIFSTITTK 268
I T+ K
Sbjct: 697 KILRTLLAK 705
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 468 VQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 295
+++I E ++ DG + V+ ATNR LD A++R R +R+I LP +
Sbjct: 634 MRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIR--RFERRIMVGLPAVENRE 691
Query: 294 LIFSTITTK 268
I T+ K
Sbjct: 692 KILRTLLAK 700
>At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to
bifunctional nuclease [Zinnia elegans]
gi|4099833|gb|AAD00694
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -3
Query: 330 IEFPLPDRRQKRLIFSTITTKMNLSVKW-----IWKSSWLDRTACPAPTSTPSVRRPACT 166
IE L K L + NL+ W +W+S L++TACP P ++ S+ AC
Sbjct: 189 IESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINL-ACK 247
Query: 165 LSGKTDT 145
+ + T
Sbjct: 248 YAYRNAT 254
>At4g14210.2 68417.m02193 phytoene dehydrogenase, chloroplast /
phytoene desaturase (PDS) identical to SP|Q07356
Phytoene dehydrogenase, chloroplast precursor (EC
1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana};
high similarity to phytoene desaturase [Lycopersicon
esculentum][GI:19287]
Length = 566
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 129 ISKRVTRITSRKMRANMNFINKRHFSVDCVLICL 28
I +RVT M +NFIN S+ C+LI L
Sbjct: 253 IPERVTDEVFIAMSKALNFINPDELSMQCILIAL 286
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 271 QDEPFGEVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
++E +VDLE D SG+D+ +C A +RE
Sbjct: 1148 KEEIAPDVDLEAIANMTDGYSGSDLKNLCVTAAHFPIRE 1186
>At4g14210.1 68417.m02192 phytoene dehydrogenase, chloroplast /
phytoene desaturase (PDS) identical to SP|Q07356
Phytoene dehydrogenase, chloroplast precursor (EC
1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana};
high similarity to phytoene desaturase [Lycopersicon
esculentum][GI:19287]
Length = 566
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 129 ISKRVTRITSRKMRANMNFINKRHFSVDCVLICL 28
+ +RVT M +NFIN S+ C+LI L
Sbjct: 253 VPERVTDEVFIAMSKALNFINPDELSMQCILIAL 286
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = -2
Query: 562 SCQRDSPAIIFIDEIDAIL 506
SC++ PA+IF+DEID++L
Sbjct: 99 SCRQ--PAVIFVDEIDSLL 115
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 271 QDEPFGEVDLEEFVARPDRVSGADINAICQEAGMHAVRE 155
++E +VDLE D SG+D+ +C A +RE
Sbjct: 1135 KEEMAEDVDLEAIANMTDGYSGSDLKNLCVTAAHLPIRE 1173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,765
Number of Sequences: 28952
Number of extensions: 251544
Number of successful extensions: 827
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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