Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    41   0.014
UniRef50_P45594 Cluster: Cofilin/actin-depolymerizing factor hom...    40   0.019
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.23 
UniRef50_Q626F7 Cluster: Putative uncharacterized protein CBG009...    32   5.0  
UniRef50_Q388N9 Cluster: Putative uncharacterized protein; n=2; ...    31   8.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.7 bits (91), Expect = 0.014
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 3   LLRWLDELTAHQVLSGYW 56
           LLRW+DELTAH VLSGYW
Sbjct: 156 LLRWVDELTAHLVLSGYW 173


>UniRef50_P45594 Cluster: Cofilin/actin-depolymerizing factor
           homolog; n=10; Pancrustacea|Rep:
           Cofilin/actin-depolymerizing factor homolog - Drosophila
           melanogaster (Fruit fly)
          Length = 148

 Score = 40.3 bits (90), Expect = 0.019
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = -1

Query: 419 QATDLSEASQXXVQEKLRATDRQ 351
           QATDLSEAS+  V+EKLRATDRQ
Sbjct: 126 QATDLSEASREAVEEKLRATDRQ 148


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.23
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 168 WYLPARTHKRSYHQ 209
           WYLPARTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q626F7 Cluster: Putative uncharacterized protein CBG00999;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG00999 - Caenorhabditis
           briggsae
          Length = 1266

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 434 SSXDXQATDLSEASQXXVQEKLRAT--DRQXTAFTHELATKPNPLSD--TPALTTRGHDT 267
           SS D  +TD S  S   +   L+ T  +R+ T      AT     SD  TP+ TT   D+
Sbjct: 493 SSSDSTSTDASSTSPTDISTTLKNTGDNRKKTTLETTTATDSTTDSDSTTPSETTMSSDS 552

Query: 266 TSRLY 252
           TS +Y
Sbjct: 553 TSSVY 557


>UniRef50_Q388N9 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 1016

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 26  HSPPGVKWLLEAIDIYNINVPPI*LQRLPRPSNRN 130
           H P G K LL A++    ++PP  +QRLP   +RN
Sbjct: 217 HMPEGSKALLAAVETIVPHIPPGVVQRLPHLKHRN 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,709,562
Number of Sequences: 1657284
Number of extensions: 8635912
Number of successful extensions: 19765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19763
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)