Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    24   0.57 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   7.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.1  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 94  YGWHIYVVDVYSF 56
           +GWH Y+ DV +F
Sbjct: 155 FGWHTYIFDVPNF 167


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 436 EVXKTXKPPTXRKRLXXPSKRSXAPP 359
           ++ +   PPT + R    S+R   PP
Sbjct: 243 QLKELENPPTPKPRPTKVSRRKPRPP 268


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 94  YGWHIYVVDVY 62
           Y WH Y+ D++
Sbjct: 400 YRWHSYIDDIF 410


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 117 GRGSRCNYMGGTFML*MSIASSNHLTPGG 31
           G     NY      L  S+A+SNHL   G
Sbjct: 204 GMHQMANYSTDYSSLTHSLAASNHLLSSG 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,596
Number of Sequences: 336
Number of extensions: 2110
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)