Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    30   0.99 
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    29   1.7  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    27   5.3  
01_06_1522 - 37962431-37963060,37963216-37963542                       27   5.3  
12_01_0849 + 7948693-7948996,7949829-7950610                           27   7.0  
02_01_0695 - 5202091-5202498,5204103-5204588                           27   7.0  
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237     27   9.2  

>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 AAPPFKPKRITASRQK*AGGGGTYP 180
           A PP +PKR+   R+K AGG G  P
Sbjct: 82  APPPPQPKRLQGGRKKGAGGHGKLP 106


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 146 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPVTT 45
           R +++  G+ G  A+V++W+ +  C  + +PV T
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPVAT 173


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 396 VSXXRPREAXRHRSPXNSIYTRARXETEPALRHSCPDD 283
           V   R R A R RSP       +R  + P+ RH C  D
Sbjct: 354 VPLCRHRRAMRSRSPSKRRRHGSRGRSPPSSRHGCAKD 391


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 11  MVGRAHSPPGVKWLLEAID 67
           +VG+ H PPG +WL E +D
Sbjct: 44  LVGQLHLPPGGRWLDEYMD 62


>12_01_0849 + 7948693-7948996,7949829-7950610
          Length = 361

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = -3

Query: 363 HRSPXNSIYTRARXETEPALRHS------CPDDTRPRHH*PLILLQRKTNSINMIDFTGG 202
           HRS   + + RAR   + A+  S       P  T P H  P  +  R+  S ++     G
Sbjct: 284 HRSSFGNPFRRARAPADVAISSSGIAASRLPSATPPLHPNPACVRYRRLRSSSLTTPPVG 343

Query: 201 RTSCESARVGTTAP 160
           R+S  + R+    P
Sbjct: 344 RSSLPARRLAAPPP 357


>02_01_0695 - 5202091-5202498,5204103-5204588
          Length = 297

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 PFKPKRITASRQK*AGGGGTYP 180
           PF P +  A++ K AGGGG  P
Sbjct: 203 PFYPTKANAAQSKAAGGGGCRP 224


>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
          Length = 572

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 310 GFGFVASSCVNAVXWRSVAR-SFSW 381
           GFG V    VNAV W S+AR S SW
Sbjct: 257 GFGIVFGG-VNAVFWSSLARVSSSW 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,074
Number of Sequences: 37544
Number of extensions: 275292
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)