Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)                      29   2.3  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      29   2.3  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   5.4  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_28631| Best HMM Match : Drf_FH1 (HMM E-Value=0.35)                  27   9.5  
SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)               27   9.5  

>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 84  CHPYSY--NGCPALQTETHYCFTAEIGRGRWYLPARTHKRSYH 206
           CHP     N C   +T+ + C   +  +  WY P++T    YH
Sbjct: 437 CHPTKTQANWCHPTKTQANLCHPTKT-QANWYHPSKTQANWYH 478


>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
          Length = 390

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 192 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 73
           C+S    TT+ C++L    NA        RC  +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 374 KLRATDRQXTAFTHEL--ATKPNPLSDTPALTTRGH 273
           K+ AT+    AFTH+L    KP  +SD P +  +G+
Sbjct: 28  KIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  LQRLPRPSNRNALLLHGRNRQGA 166
           +QR P P+ RN++ LHG   Q A
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQTA 52


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 77  INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEV 199
           ++VPP  L R  RP N   L + G +   + +P +  ++++
Sbjct: 299 LSVPPEQLSRNERPKNTTTLFVSGVDTMASKLPVQRSARDI 339


>SB_28631| Best HMM Match : Drf_FH1 (HMM E-Value=0.35)
          Length = 240

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 326 ATKPNPLSDTPALTTRGHDTTS 261
           A KP P+SDT A+TT   +T +
Sbjct: 92  AVKPKPVSDTVAMTTDNLETVA 113


>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
          Length = 506

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 91  HIVTTAAPPFKPKR-ITASRQK*-AGGGGTYPRGLTRG 198
           H+V +A+  F  KR I   + K  AG  GTYP+G+  G
Sbjct: 377 HLVKSASGHFALKRLILQDKDKLEAGKDGTYPKGVLEG 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,233
Number of Sequences: 59808
Number of extensions: 276487
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)