Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   0.93 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   0.93 
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    22   8.7  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
 Frame = +1

Query: 13  GWTSSQPTRC*VVTGSYRH--LQHKCATHIVTTAAPPFKPKR----ITASRQK*AGGGGT 174
           G  + Q  RC  +    +H   Q     H+  TA   + P+R    I   R   A GGG+
Sbjct: 132 GCNAGQTNRCSSLKDLIKHGETQAVIEIHLENTAFNAYDPERYGGRIICERTLNASGGGS 191

Query: 175 YPRGLTRGPTTS 210
           Y      G T S
Sbjct: 192 YKLKNEHGQTVS 203


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 98   LQRLPRPSNRNALLL---HGRNRQGAVVPTRADS 190
            LQRL R   R   L    HGRNR+    P+ AD+
Sbjct: 1143 LQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADT 1176


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 32   PPGVKWLLEAIDIYNINVPPI*LQRLPRPSNRN-ALLLHGRNRQGAVVPTRADSQEVLPP 208
            PPG+++ L +  I   ++P +    +PR  N++  + L+    +  V  T+   ++    
Sbjct: 1753 PPGIEFTLPSPKIGIESLPVVDPPWMPRQQNKDMEVTLNQERHRSLVTATKTRKKQQTEA 1812

Query: 209  VKSIIL 226
            ++  +L
Sbjct: 1813 IRHAML 1818


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,861
Number of Sequences: 2352
Number of extensions: 9808
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38268990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)