Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    30   0.89 
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    30   0.89 
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    30   0.89 
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    30   0.89 
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical ...    27   6.3  
AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 297 SC-PDDTRPRHH*PLILLQRKTNSINMIDFTGG--RTSCESARVGTT 166
           SC P DT    + P+IL++R TNSI  +D   G  R +  +A +G T
Sbjct: 170 SCGPGDTETPKN-PIILIRRTTNSIRAMDTLRGIERWNLSTAEIGVT 215


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 297 SC-PDDTRPRHH*PLILLQRKTNSINMIDFTGG--RTSCESARVGTT 166
           SC P DT    + P+IL++R TNSI  +D   G  R +  +A +G T
Sbjct: 170 SCGPGDTETPKN-PIILIRRTTNSIRAMDTLRGIERWNLSTAEIGVT 215


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 297 SC-PDDTRPRHH*PLILLQRKTNSINMIDFTGG--RTSCESARVGTT 166
           SC P DT    + P+IL++R TNSI  +D   G  R +  +A +G T
Sbjct: 170 SCGPGDTETPKN-PIILIRRTTNSIRAMDTLRGIERWNLSTAEIGVT 215


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 297 SC-PDDTRPRHH*PLILLQRKTNSINMIDFTGG--RTSCESARVGTT 166
           SC P DT    + P+IL++R TNSI  +D   G  R +  +A +G T
Sbjct: 170 SCGPGDTETPKN-PIILIRRTTNSIRAMDTLRGIERWNLSTAEIGVT 215


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 285 RQGRSVGERVRFRXELVCKCC 347
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical
           protein F54B8.2 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 GRSVGERVRFRXELVCKCCXLAI 359
           G  +GER++FR  LV KCC L I
Sbjct: 133 GIELGERIKFR--LVAKCCELQI 153


>AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8b protein.
          Length = 586

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 128 NALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVFLCNNISG*W 268
           N  +LH   R  A  P   D ++V+P V  ++  +  F    ISG W
Sbjct: 129 NRAVLHVALRNRANRPILVDGKDVMPDVNRVLAHMKEFCNEIISGSW 175


>AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8a protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 128 NALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVFLCNNISG*W 268
           N  +LH   R  A  P   D ++V+P V  ++  +  F    ISG W
Sbjct: 94  NRAVLHVALRNRANRPILVDGKDVMPDVNRVLAHMKEFCNEIISGSW 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,860,459
Number of Sequences: 27780
Number of extensions: 196039
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)